HL_5JUP_014
3D structure
- PDB id
- 5JUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- AAUGUAAAUACCU
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5JUP_014 not in the Motif Atlas
- Geometric match to HL_4V88_199
- Geometric discrepancy: 0.2162
- The information below is about HL_4V88_199
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_05304.1
- Basepair signature
- cWW-cWW-F-F-tSH-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
5JUP|1|A|A|520
5JUP|1|A|A|521
5JUP|1|A|U|522
5JUP|1|A|G|523
5JUP|1|A|U|524
5JUP|1|A|A|525
5JUP|1|A|A|526
5JUP|1|A|A|527
5JUP|1|A|U|528
5JUP|1|A|A|529
5JUP|1|A|C|530
5JUP|1|A|C|531
5JUP|1|A|U|532
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain BB
- eS4 (yeast S4)
- Chain GB
- uS4 (yeast S9)
- Chain VB
- eS24 (yeast S24)
Coloring options: