HL_5JUP_016
3D structure
- PDB id
- 5JUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GCUAACCUUUGGCGAACGUGGCUCUUGGCGAA*C
- Length
- 33 nucleotides
- Bulged bases
- 5JUP|1|A|G|732, 5JUP|1|A|A|733, 5JUP|1|A|G|720, 5JUP|1|A|U|721, 5JUP|1|A|G|722, 5JUP|1|A|G|723, 5JUP|1|A|C|724, 5JUP|1|A|U|725, 5JUP|1|A|C|726, 5JUP|1|A|U|727, 5JUP|1|A|U|728, 5JUP|1|A|G|730, 5JUP|1|A|G|732, 5JUP|1|A|A|733
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5JUP|1|A|G|703
5JUP|1|A|C|704
5JUP|1|A|U|705
5JUP|1|A|A|706
5JUP|1|A|A|707
5JUP|1|A|C|708
5JUP|1|A|C|709
5JUP|1|A|U|710
5JUP|1|A|U|711
5JUP|1|A|U|728
5JUP|1|A|G|729
5JUP|1|A|G|730
5JUP|1|A|C|731
5JUP|1|A|G|732
5JUP|1|A|A|733
5JUP|1|A|A|734
5JUP|1|A|C|735
5JUP|1|A|G|720
5JUP|1|A|U|721
5JUP|1|A|G|722
5JUP|1|A|G|723
5JUP|1|A|C|724
5JUP|1|A|U|725
5JUP|1|A|C|726
5JUP|1|A|U|727
5JUP|1|A|U|728
5JUP|1|A|G|729
5JUP|1|A|G|730
5JUP|1|A|C|731
5JUP|1|A|G|732
5JUP|1|A|A|733
5JUP|1|A|A|734
*
5JUP|1|A|C|735
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain BB
- eS4 (yeast S4)
- Chain DB
- eS6 (yeast S6)
Coloring options: