HL_5JUP_020
3D structure
- PDB id
- 5JUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CAGGUGAAAUAUUG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5JUP|1|A|C|890
5JUP|1|A|A|891
5JUP|1|A|G|901
5JUP|1|A|G|902
5JUP|1|A|U|903
5JUP|1|A|G|904
5JUP|1|A|A|905
5JUP|1|A|A|906
5JUP|1|A|A|907
5JUP|1|A|U|918
5JUP|1|A|A|919
5JUP|1|A|U|920
5JUP|1|A|U|921
5JUP|1|A|G|922
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain B
- Large subunit ribosomal RNA; LSU rRNA
- Chain EC
- IRES
- Chain F
- uL2 (yeast L2)
- Chain LB
- uS11 (yeast S14)
- Chain XB
- eS26 (yeast S26)
- Chain YA
- eS1 (yeast S1)
Coloring options: