HL_5JUP_034

3D structure

PDB id

5JUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UUAGAGAAGGGCAUCUCAGAAUCUCAG*A

Length

28 nucleotides

Bulged bases

5JUP|1|A|G|1697

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JUP|1|A|U|1687
5JUP|1|A|U|1688
5JUP|1|A|A|1689
5JUP|1|A|G|1690
5JUP|1|A|A|1691
5JUP|1|A|G|1692
5JUP|1|A|A|1693
5JUP|1|A|A|1694
5JUP|1|A|G|1695
5JUP|1|A|G|1696
5JUP|1|A|G|1697
5JUP|1|A|C|1706
5JUP|1|A|A|1707
5JUP|1|A|U|1708
5JUP|1|A|C|1709
5JUP|1|A|U|1710
5JUP|1|A|C|1711
5JUP|1|A|A|1712
5JUP|1|A|G|1713
5JUP|1|A|A|1714
5JUP|1|A|A|1707
5JUP|1|A|U|1708
5JUP|1|A|C|1709
5JUP|1|A|U|1710
5JUP|1|A|C|1711
5JUP|1|A|A|1712
5JUP|1|A|G|1713
*
5JUP|1|A|A|1714

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain DB

eS6 (yeast S6)