HL_5JUP_065
3D structure
- PDB id
- 5JUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- UUGAUAUGAUG
- Length
- 11 nucleotides
- Bulged bases
- 5JUP|1|B|U|1351, 5JUP|1|B|A|1352, 5JUP|1|B|U|1353, 5JUP|1|B|G|1354, 5JUP|1|B|U|1356
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5JUP_065 not in the Motif Atlas
- Geometric match to HL_4OOG_001
- Geometric discrepancy: 0.201
- The information below is about HL_4OOG_001
- Detailed Annotation
- Mini UNCG
- Broad Annotation
- No text annotation
- Motif group
- HL_12626.2
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 17
Unit IDs
5JUP|1|B|U|1347
5JUP|1|B|U|1348
5JUP|1|B|G|1349
5JUP|1|B|A|1350
5JUP|1|B|U|1351
5JUP|1|B|A|1352
5JUP|1|B|U|1353
5JUP|1|B|G|1354
5JUP|1|B|A|1355
5JUP|1|B|U|1356
5JUP|1|B|G|1357
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain H
- uL4 (yeast L4)
- Chain J
- eL6 (yeast L6)
- Chain JA
- eL32 (yeast L32)
- Chain V
- eL18 (yeast L18)
Coloring options: