HL_5JUP_080

3D structure

PDB id

5JUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UGAGGGCCUGACGGCCUUGGUAGGCGUCG

Length

29 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JUP|1|B|U|1958
5JUP|1|B|G|1959
5JUP|1|B|A|1960
5JUP|1|B|G|1961
5JUP|1|B|G|1962
5JUP|1|B|G|1963
5JUP|1|B|C|1964
5JUP|1|B|C|1965
5JUP|1|B|U|1966
5JUP|1|B|G|2048
5JUP|1|B|A|2049
5JUP|1|B|C|2050
5JUP|1|B|G|2051
5JUP|1|B|G|2052
5JUP|1|B|C|2053
5JUP|1|B|C|2054
5JUP|1|B|U|2055
5JUP|1|B|U|2056
5JUP|1|B|G|2057
5JUP|1|B|G|2058
5JUP|1|B|U|2059
5JUP|1|B|A|2060
5JUP|1|B|G|2061
5JUP|1|B|G|2062
5JUP|1|B|C|2075
5JUP|1|B|G|2076
5JUP|1|B|U|2077
5JUP|1|B|C|2078
5JUP|1|B|G|2079

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain PA

eL38 (yeast L38)