HL_5JUP_087

3D structure

PDB id

5JUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

5JUP|1|B|A|2372, 5JUP|1|B|A|2373, 5JUP|1|B|C|2374

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JUP_087 not in the Motif Atlas

Homologous match to HL_8C3A_051

Geometric discrepancy: 0.073

The information below is about HL_8C3A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

5JUP|1|B|G|2369
5JUP|1|B|G|2370
5JUP|1|B|G|2371
5JUP|1|B|A|2372
5JUP|1|B|A|2373
5JUP|1|B|C|2374
5JUP|1|B|G|2375
5JUP|1|B|G|2376
5JUP|1|B|G|2377
5JUP|1|B|C|2378

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain G

uL3 (yeast L3)

Chain JA

eL32 (yeast L32)