HL_5JUP_088
3D structure
- PDB id
- 5JUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- AGACAUAGAGGGUGUAGAAUAAGUGGGAGCUUCGGCGCCAGUGAAAUACCACUACCUUUAUAGUUU
- Length
- 66 nucleotides
- Bulged bases
- 5JUP|1|B|A|2458, 5JUP|1|B|U|2472, 5JUP|1|B|C|2473, 5JUP|1|B|A|2494, 5JUP|1|B|C|2496, 5JUP|1|B|U|2498
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5JUP|1|B|A|2441
5JUP|1|B|G|2442
5JUP|1|B|A|2443
5JUP|1|B|C|2444
5JUP|1|B|A|2445
5JUP|1|B|U|2446
5JUP|1|B|A|2447
5JUP|1|B|G|2448
5JUP|1|B|A|2449
5JUP|1|B|G|2450
5JUP|1|B|G|2451
5JUP|1|B|G|2452
5JUP|1|B|U|2453
5JUP|1|B|G|2454
5JUP|1|B|U|2455
5JUP|1|B|A|2456
5JUP|1|B|G|2457
5JUP|1|B|A|2458
5JUP|1|B|A|2459
5JUP|1|B|U|2460
5JUP|1|B|A|2461
5JUP|1|B|A|2462
5JUP|1|B|G|2463
5JUP|1|B|U|2464
5JUP|1|B|G|2465
5JUP|1|B|G|2466
5JUP|1|B|G|2467
5JUP|1|B|A|2468
5JUP|1|B|G|2469
5JUP|1|B|C|2470
5JUP|1|B|U|2471
5JUP|1|B|U|2472
5JUP|1|B|C|2473
5JUP|1|B|G|2474
5JUP|1|B|G|2475
5JUP|1|B|C|2476
5JUP|1|B|G|2477
5JUP|1|B|C|2478
5JUP|1|B|C|2479
5JUP|1|B|A|2480
5JUP|1|B|G|2481
5JUP|1|B|U|2482
5JUP|1|B|G|2483
5JUP|1|B|A|2484
5JUP|1|B|A|2485
5JUP|1|B|A|2486
5JUP|1|B|U|2487
5JUP|1|B|A|2488
5JUP|1|B|C|2489
5JUP|1|B|C|2490
5JUP|1|B|A|2491
5JUP|1|B|C|2492
5JUP|1|B|U|2493
5JUP|1|B|A|2494
5JUP|1|B|C|2495
5JUP|1|B|C|2496
5JUP|1|B|U|2497
5JUP|1|B|U|2498
5JUP|1|B|U|2499
5JUP|1|B|A|2500
5JUP|1|B|U|2501
5JUP|1|B|A|2502
5JUP|1|B|G|2503
5JUP|1|B|U|2504
5JUP|1|B|U|2505
5JUP|1|B|U|2506
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain E
- uL1 (yeast L1)
- Chain EC
- IRES
- Chain L
- eL8 (yeast L8)
- Chain NA
- eL36 (yeast L36)
- Chain S
- eL15 (yeast L15)
- Chain YA
- eS1 (yeast S1)
Coloring options: