HL_5JUP_104

3D structure

PDB id

5JUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

5JUP|1|B|G|3116

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JUP_104 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.0878

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

5JUP|1|B|C|3110
5JUP|1|B|U|3111
5JUP|1|B|G|3112
5JUP|1|B|A|3113
5JUP|1|B|A|3114
5JUP|1|B|C|3115
5JUP|1|B|G|3116
5JUP|1|B|C|3117
5JUP|1|B|C|3118
5JUP|1|B|U|3119
5JUP|1|B|C|3120
5JUP|1|B|U|3121
5JUP|1|B|A|3122
5JUP|1|B|A|3123
5JUP|1|B|G|3124

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain M

uL6 (yeast L9)

Chain RA

eL40 (yeast L40)

Chain T

uL13 (yeast L16)