HL_5JUP_111

3D structure

PDB id

5JUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUAUUC

Length

6 nucleotides

Bulged bases

5JUP|1|C|U|125, 5JUP|1|C|U|127, 5JUP|1|C|U|128

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JUP_111 not in the Motif Atlas

Homologous match to HL_5TBW_076

Geometric discrepancy: 0.4616

The information below is about HL_5TBW_076

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_45177.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

5JUP|1|C|G|124
5JUP|1|C|U|125
5JUP|1|C|A|126
5JUP|1|C|U|127
5JUP|1|C|U|128
5JUP|1|C|C|129

Current chains

Chain C

5.8S ribosomal RNA

Nearby chains

Chain B

Large subunit ribosomal RNA; LSU rRNA

Chain CA

uL23 (yeast L25)