HL_5JUP_115

3D structure

PDB id

5JUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UGCUGUUUAGC*G

Length

12 nucleotides

Bulged bases

5JUP|1|EC|U|6841, 5JUP|1|EC|U|6842, 5JUP|1|EC|U|6843, 5JUP|1|EC|A|6844, 5JUP|1|EC|G|6845, 5JUP|1|EC|C|6846

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JUP_115 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.1562

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

5JUP|1|EC|U|6836
5JUP|1|EC|G|6837
5JUP|1|EC|C|6838
5JUP|1|EC|U|6839
5JUP|1|EC|G|6847
5JUP|1|EC|U|6841
5JUP|1|EC|U|6842
5JUP|1|EC|U|6843
5JUP|1|EC|A|6844
5JUP|1|EC|G|6845
5JUP|1|EC|C|6846
*
5JUP|1|EC|G|6847

Current chains

Chain EC

IRES

Nearby chains

Chain CB

uS7 (yeast S5)

Chain LB

uS11 (yeast S14)