HL_5JUP_119
3D structure
- PDB id
- 5JUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- AAUUGUCAGAGGUGAAAUUCUUGGAUUUAUU
- Length
- 31 nucleotides
- Bulged bases
- 5JUP|1|A|A|892, 5JUP|1|A|U|893, 5JUP|1|A|U|894, 5JUP|1|A|G|895, 5JUP|1|A|U|896, 5JUP|1|A|C|897, 5JUP|1|A|A|898, 5JUP|1|A|G|899, 5JUP|1|A|A|900, 5JUP|1|A|U|908, 5JUP|1|A|U|909, 5JUP|1|A|C|910, 5JUP|1|A|U|911, 5JUP|1|A|U|912, 5JUP|1|A|G|913, 5JUP|1|A|G|914, 5JUP|1|A|A|915, 5JUP|1|A|U|916, 5JUP|1|A|U|917
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5JUP|1|A|A|891
5JUP|1|A|A|892
5JUP|1|A|U|893
5JUP|1|A|U|894
5JUP|1|A|G|895
5JUP|1|A|U|896
5JUP|1|A|C|897
5JUP|1|A|A|898
5JUP|1|A|G|899
5JUP|1|A|A|900
5JUP|1|A|G|901
5JUP|1|A|G|902
5JUP|1|A|U|903
5JUP|1|A|G|904
5JUP|1|A|A|905
5JUP|1|A|A|906
5JUP|1|A|A|907
5JUP|1|A|U|908
5JUP|1|A|U|909
5JUP|1|A|C|910
5JUP|1|A|U|911
5JUP|1|A|U|912
5JUP|1|A|G|913
5JUP|1|A|G|914
5JUP|1|A|A|915
5JUP|1|A|U|916
5JUP|1|A|U|917
5JUP|1|A|U|918
5JUP|1|A|A|919
5JUP|1|A|U|920
5JUP|1|A|U|921
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain B
- Large subunit ribosomal RNA; LSU rRNA
- Chain EC
- IRES
- Chain F
- uL2 (yeast L2)
- Chain LB
- uS11 (yeast S14)
- Chain XB
- eS26 (yeast S26)
- Chain YA
- eS1 (yeast S1)
Coloring options: