HL_5JUP_126
3D structure
- PDB id
- 5JUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- UGUAAAA
- Length
- 7 nucleotides
- Bulged bases
- 5JUP|1|B|U|689, 5JUP|1|B|A|691
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5JUP_126 not in the Motif Atlas
- Geometric match to HL_5J7L_151
- Geometric discrepancy: 0.243
- The information below is about HL_5J7L_151
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_80922.2
- Basepair signature
- cWW-tSH-F
- Number of instances in this motif group
- 3
Unit IDs
5JUP|1|B|U|687
5JUP|1|B|G|688
5JUP|1|B|U|689
5JUP|1|B|A|690
5JUP|1|B|A|691
5JUP|1|B|A|692
5JUP|1|B|A|693
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain C
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain DA
- uL24 (yeast L26)
- Chain H
- uL4 (yeast L4)
- Chain Q
- eL13 (yeast L13)
- Chain S
- eL15 (yeast L15)
Coloring options: