HL_5JUP_127

3D structure

PDB id

5JUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UCGAAAACUCUCCGAACACUAGG

Length

23 nucleotides

Bulged bases

5JUP|1|EC|G|6789, 5JUP|1|EC|A|6791, 5JUP|1|EC|A|6792, 5JUP|1|EC|A|6793, 5JUP|1|EC|C|6794, 5JUP|1|EC|C|6798, 5JUP|1|EC|C|6799, 5JUP|1|EC|A|6802, 5JUP|1|EC|C|6803, 5JUP|1|EC|A|6804, 5JUP|1|EC|U|6806, 5JUP|1|EC|A|6807

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JUP|1|EC|U|6787
5JUP|1|EC|C|6788
5JUP|1|EC|G|6789
5JUP|1|EC|A|6790
5JUP|1|EC|A|6791
5JUP|1|EC|A|6792
5JUP|1|EC|A|6793
5JUP|1|EC|C|6794
5JUP|1|EC|U|6795
5JUP|1|EC|C|6796
5JUP|1|EC|U|6797
5JUP|1|EC|C|6798
5JUP|1|EC|C|6799
5JUP|1|EC|G|6800
5JUP|1|EC|A|6801
5JUP|1|EC|A|6802
5JUP|1|EC|C|6803
5JUP|1|EC|A|6804
5JUP|1|EC|C|6805
5JUP|1|EC|U|6806
5JUP|1|EC|A|6807
5JUP|1|EC|G|6808
5JUP|1|EC|G|6809

Current chains

Chain EC

IRES

Nearby chains

Chain TA

eL42 (yeast L42)