HL_5JUS_011

3D structure

PDB id

5JUS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CCAAGG

Length

6 nucleotides

Bulged bases

5JUS|1|A|A|416

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JUS_011 not in the Motif Atlas

Homologous match to HL_4V88_196

Geometric discrepancy: 0.2261

The information below is about HL_4V88_196

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

5JUS|1|A|C|414
5JUS|1|A|C|415
5JUS|1|A|A|416
5JUS|1|A|A|417
5JUS|1|A|G|418
5JUS|1|A|G|419

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain AA

uL14 (yeast L23)

Chain DB

eS6 (yeast S6)

Chain VB

eS24 (yeast S24)