5JUS Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_5JUS_002 | 1/A/70:81 | No text annotation | geometric HL_7A0S_011 HL_75660.5 | |
| HL_5JUS_036 | 1/B/38:45 | No text annotation | geometric HL_4WF9_006 HL_30068.2 | |
| HL_5JUS_044 | 1/B/303:312 | Pseudoknot geometry | homologous HL_8C3A_009 NA | |
| HL_5JUS_076 | 1/B/1792:1796 | No text annotation | homologous HL_8C3A_040 NA | |
| HL_5JUS_077 | 1/B/1844:1851 | No text annotation | homologous HL_8C3A_041 NA | |
| HL_5JUS_086 | 1/B/2292:2300 | No text annotation | homologous HL_5TBW_050 NA | |
| HL_5JUS_106 | 1/B/3240:3247 | No text annotation | homologous HL_5TBW_069 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_5JUS_001 | No text annotation | ||
| HL_5JUS_003 | GNRA related | ||
| HL_5JUS_004 | No text annotation | ||
| HL_5JUS_005 | Externally structured | ||
| HL_5JUS_006 | T-loop with 1 bulged base | ||
| HL_5JUS_007 | No text annotation | ||
| HL_5JUS_008 | GNRA related | ||
| HL_5JUS_009 | No text annotation | ||
| HL_5JUS_010 | No text annotation | ||
| HL_5JUS_011 | UNCG | ||
| HL_5JUS_012 | No text annotation | ||
| HL_5JUS_013 | No text annotation | ||
| HL_5JUS_014 | No text annotation | ||
| HL_5JUS_015 | GNRA variation | ||
| HL_5JUS_016 | No text annotation | ||
| HL_5JUS_017 | No text annotation | ||
| HL_5JUS_120 | No text annotation | ||
| HL_5JUS_018 | No text annotation | ||
| HL_5JUS_019 | Pseudoknot geometry | ||
| HL_5JUS_020 | No text annotation | ||
| HL_5JUS_021 | GNRA | ||
| HL_5JUS_022 | No text annotation | ||
| HL_5JUS_023 | GNRA | ||
| HL_5JUS_024 | GNRA | ||
| HL_5JUS_025 | No text annotation | ||
| HL_5JUS_026 | Anticodon loop related | ||
| HL_5JUS_027 | GNRA | ||
| HL_5JUS_028 | No text annotation | ||
| HL_5JUS_029 | No text annotation | ||
| HL_5JUS_030 | GNRA | ||
| HL_5JUS_031 | GNRA | ||
| HL_5JUS_032 | No text annotation | ||
| HL_5JUS_121 | No text annotation | ||
| HL_5JUS_033 | No text annotation | ||
| HL_5JUS_034 | No text annotation | ||
| HL_5JUS_122 | No text annotation | ||
| HL_5JUS_035 | No text annotation | ||
| HL_5JUS_037 | No text annotation | ||
| HL_5JUS_038 | No text annotation | ||
| HL_5JUS_039 | No text annotation | ||
| HL_5JUS_040 | T-loop with 2 stacked bulged bases | ||
| HL_5JUS_041 | No text annotation | ||
| HL_5JUS_042 | T-loop with unstacked turn | ||
| HL_5JUS_043 | No text annotation | ||
| HL_5JUS_045 | GNRA | ||
| HL_5JUS_046 | GNRA | ||
| HL_5JUS_047 | No text annotation | ||
| HL_5JUS_048 | No text annotation | ||
| HL_5JUS_123 | No text annotation | ||
| HL_5JUS_049 | GNRA | ||
| HL_5JUS_050 | T-loop with 2 stacked bulged bases | ||
| HL_5JUS_051 | No text annotation | ||
| HL_5JUS_052 | GNRA | ||
| HL_5JUS_053 | GNRA | ||
| HL_5JUS_054 | No text annotation | ||
| HL_5JUS_055 | GNRA | ||
| HL_5JUS_056 | No text annotation | ||
| HL_5JUS_057 | No text annotation | ||
| HL_5JUS_058 | Externally structured | ||
| HL_5JUS_059 | GNRA | ||
| HL_5JUS_060 | No text annotation | ||
| HL_5JUS_061 | GNRA | ||
| HL_5JUS_062 | No text annotation | ||
| HL_5JUS_063 | No text annotation | ||
| HL_5JUS_064 | GNRA wlth tandem sheared | ||
| HL_5JUS_065 | Mini UNCG | ||
| HL_5JUS_066 | GNRA | ||
| HL_5JUS_067 | T-loop with 2 stacked bulged bases | ||
| HL_5JUS_068 | Pseudoknot geometry with 3' bulge | ||
| HL_5JUS_069 | GNRA variation | ||
| HL_5JUS_070 | No text annotation | ||
| HL_5JUS_071 | No text annotation | ||
| HL_5JUS_072 | GNRA | ||
| HL_5JUS_073 | No text annotation | ||
| HL_5JUS_074 | No text annotation | ||
| HL_5JUS_075 | No text annotation | ||
| HL_5JUS_078 | GNRA | ||
| HL_5JUS_079 | UNCG | ||
| HL_5JUS_080 | No text annotation | ||
| HL_5JUS_081 | No text annotation | ||
| HL_5JUS_082 | No text annotation | ||
| HL_5JUS_083 | GNRA | ||
| HL_5JUS_084 | GNRA | ||
| HL_5JUS_085 | No text annotation | ||
| HL_5JUS_087 | No text annotation | ||
| HL_5JUS_088 | No text annotation | ||
| HL_5JUS_089 | No text annotation | ||
| HL_5JUS_090 | No text annotation | ||
| HL_5JUS_091 | No text annotation | ||
| HL_5JUS_092 | No text annotation | ||
| HL_5JUS_093 | No text annotation | ||
| HL_5JUS_094 | Pseudoknot geometry | ||
| HL_5JUS_095 | No text annotation | ||
| HL_5JUS_096 | GNRA | ||
| HL_5JUS_097 | Pseudoknot geometry | ||
| HL_5JUS_098 | No text annotation | ||
| HL_5JUS_099 | No text annotation | ||
| HL_5JUS_127 | GNRA variation | ||
| HL_5JUS_100 | No text annotation | ||
| HL_5JUS_101 | GNRA | ||
| HL_5JUS_102 | GNRA | ||
| HL_5JUS_103 | No text annotation | ||
| HL_5JUS_124 | Ribsomal LSU H95 | ||
| HL_5JUS_104 | No text annotation | ||
| HL_5JUS_105 | No text annotation | ||
| HL_5JUS_107 | No text annotation | ||
| HL_5JUS_108 | Mini UNCG | ||
| HL_5JUS_109 | Pseudoknot with intercalation | ||
| HL_5JUS_110 | No text annotation | ||
| HL_5JUS_111 | No text annotation | ||
| HL_5JUS_112 | No text annotation | ||
| HL_5JUS_113 | No text annotation | ||
| HL_5JUS_114 | GNRA | ||
| HL_5JUS_115 | No text annotation | ||
| HL_5JUS_125 | No text annotation | ||
| HL_5JUS_128 | No text annotation | ||
| HL_5JUS_116 | No text annotation | ||
| HL_5JUS_117 | Mini UNCG | ||
| HL_5JUS_118 | No text annotation | ||
| HL_5JUS_126 | No text annotation | ||
| HL_5JUS_119 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_5JUS_094 | 1/B/189:191, 1/B/204:205 | Single bulged U | homologous IL_5TBW_012 NA | |
| IL_5JUS_097 | 1/B/404:411, 1/C/12:19 | No text annotation | ||
| IL_5JUS_104 | 1/B/680:684, 1/B/696:700 | No text annotation | homologous IL_8C3A_024 NA | |
| IL_5JUS_155 | 1/B/1702:1707, 1/B/1737:1743 | No text annotation | homologous IL_5TBW_072 NA | |
| IL_5JUS_172 | 1/B/2277:2288, 1/B/2304:2307 | No text annotation | homologous IL_8C3A_095 NA | |
| IL_5JUS_175 | 1/B/2409:2411, 1/B/2811:2812 | Single bulged U | homologous IL_8C3A_098 NA | |
| IL_5JUS_189 | 1/B/2879:2881, 1/B/2943:2947 | Isolated non-canonical cWW with bulges | homologous IL_5TBW_108 NA | |
| IL_5JUS_197 | 1/B/3018:3025, 1/B/3030:3036 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5TBW_116 NA | |
| IL_5JUS_200 | 1/B/3063:3064, 1/B/3077:3080 | No text annotation | homologous IL_8C3A_128 NA | |
| IL_5JUS_205 | 1/B/3179:3188, 1/B/3204:3210 | No text annotation | geometric IL_5TBW_124 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_5JUS_001 | Single bulged C | ||
| IL_5JUS_227 | Isolated non-canonical cWW pair | ||
| IL_5JUS_002 | Triple sheared related | ||
| IL_5JUS_003 | No text annotation | ||
| IL_5JUS_004 | Minor groove platform | ||
| IL_5JUS_005 | No text annotation | ||
| IL_5JUS_006 | No text annotation | ||
| IL_5JUS_007 | Tandem non-canonical cWW pairs | ||
| IL_5JUS_008 | Multiple bulged bases | ||
| IL_5JUS_009 | No text annotation | ||
| IL_5JUS_010 | tWH-tWH-tHW-tHW | ||
| IL_5JUS_228 | No text annotation | ||
| IL_5JUS_011 | No text annotation | ||
| IL_5JUS_012 | Double sheared | ||
| IL_5JUS_013 | Major groove platform with extra cWW | ||
| IL_5JUS_014 | Isolated non-canonical cWW pair | ||
| IL_5JUS_015 | Single bulged A | ||
| IL_5JUS_016 | No text annotation | ||
| IL_5JUS_017 | Isolated non-canonical cWW pair | ||
| IL_5JUS_266 | Single bulged U | ||
| IL_5JUS_018 | Kink-turn with non-sequential stacking | ||
| IL_5JUS_019 | No text annotation | ||
| IL_5JUS_020 | No text annotation | ||
| IL_5JUS_021 | Isolated cWH basepair | ||
| IL_5JUS_022 | Isolated near basepair | ||
| IL_5JUS_023 | Single bulged U | ||
| IL_5JUS_024 | C-loop | ||
| IL_5JUS_025 | Single bulged G | ||
| IL_5JUS_026 | No text annotation | ||
| IL_5JUS_027 | Minor groove platform | ||
| IL_5JUS_028 | Minor groove platform | ||
| IL_5JUS_029 | SSU/LSU pseudoknot | ||
| IL_5JUS_030 | Single bulged U | ||
| IL_5JUS_031 | Kink-turn related | ||
| IL_5JUS_032 | Isolated non-canonical cWW pair | ||
| IL_5JUS_033 | tSH-tHW-tHS | ||
| IL_5JUS_034 | Isolated non-canonical cWW pair | ||
| IL_5JUS_229 | No text annotation | ||
| IL_5JUS_035 | No text annotation | ||
| IL_5JUS_036 | Major groove minor groove platform; mini C-loop | ||
| IL_5JUS_037 | Isolated non-canonical cWW pair | ||
| IL_5JUS_038 | No text annotation | ||
| IL_5JUS_039 | No text annotation | ||
| IL_5JUS_040 | Major groove platform; stack outside cWW | ||
| IL_5JUS_041 | Tandem non-canonical cWW pairs | ||
| IL_5JUS_230 | Single bulged U | ||
| IL_5JUS_042 | Isolated non-canonical cWW pair | ||
| IL_5JUS_043 | Tandem non-canonical cWW pairs | ||
| IL_5JUS_044 | Tandem non-canonical cWW pairs | ||
| IL_5JUS_231 | Isolated non-canonical cWW pair | ||
| IL_5JUS_045 | No text annotation | ||
| IL_5JUS_046 | Tandem non-canonical cWW pairs | ||
| IL_5JUS_047 | No text annotation | ||
| IL_5JUS_048 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
| IL_5JUS_049 | Single bulged A | ||
| IL_5JUS_050 | Single bulged G | ||
| IL_5JUS_051 | C-loop | ||
| IL_5JUS_052 | Isolated non-canonical cWW pair | ||
| IL_5JUS_053 | Minor groove platform | ||
| IL_5JUS_054 | Isolated non-canonical cWW pair | ||
| IL_5JUS_055 | No text annotation | ||
| IL_5JUS_232 | No text annotation | ||
| IL_5JUS_056 | No text annotation | ||
| IL_5JUS_057 | No text annotation | ||
| IL_5JUS_058 | Single bulged U | ||
| IL_5JUS_059 | No text annotation | ||
| IL_5JUS_233 | No text annotation | ||
| IL_5JUS_060 | Minor groove platform with extra cWW | ||
| IL_5JUS_061 | Single bulged A | ||
| IL_5JUS_062 | Isolated cWH basepair | ||
| IL_5JUS_063 | Minor groove platform | ||
| IL_5JUS_064 | Isolated non-canonical cWW pair | ||
| IL_5JUS_065 | Minor groove platform | ||
| IL_5JUS_234 | No text annotation | ||
| IL_5JUS_066 | No text annotation | ||
| IL_5JUS_067 | Major groove platform; stack outside cWW | ||
| IL_5JUS_235 | No text annotation | ||
| IL_5JUS_068 | No text annotation | ||
| IL_5JUS_069 | 180 degree turn | ||
| IL_5JUS_070 | Tandem non-canonical cWW pairs | ||
| IL_5JUS_236 | No text annotation | ||
| IL_5JUS_071 | No text annotation | ||
| IL_5JUS_072 | No text annotation | ||
| IL_5JUS_073 | No text annotation | ||
| IL_5JUS_074 | Isolated non-canonical cWW pair | ||
| IL_5JUS_075 | No text annotation | ||
| IL_5JUS_076 | Isolated non-canonical cWW pair | ||
| IL_5JUS_077 | Double sheared | ||
| IL_5JUS_237 | Single bulged U | ||
| IL_5JUS_078 | Isolated cWS basepair | ||
| IL_5JUS_079 | Isolated non-canonical cWW pair | ||
| IL_5JUS_080 | Double sheared | ||
| IL_5JUS_081 | Isolated non-canonical cWW pair | ||
| IL_5JUS_082 | Tandem non-canonical cWW pairs | ||
| IL_5JUS_083 | Triple sheared | ||
| IL_5JUS_267 | No text annotation | ||
| IL_5JUS_084 | No text annotation | ||
| IL_5JUS_085 | No text annotation | ||
| IL_5JUS_238 | No text annotation | ||
| IL_5JUS_086 | No text annotation | ||
| IL_5JUS_087 | No text annotation | ||
| IL_5JUS_088 | No text annotation | ||
| IL_5JUS_089 | No text annotation | ||
| IL_5JUS_090 | Isolated non-canonical cWW pair | ||
| IL_5JUS_239 | Single stack bend | ||
| IL_5JUS_091 | No text annotation | ||
| IL_5JUS_092 | No text annotation | ||
| IL_5JUS_093 | No text annotation | ||
| IL_5JUS_268 | No text annotation | ||
| IL_5JUS_240 | No text annotation | ||
| IL_5JUS_241 | Isolated non-canonical cWW pair | ||
| IL_5JUS_095 | Single bulged A | ||
| IL_5JUS_096 | No text annotation | ||
| IL_5JUS_098 | Isolated non-canonical cWW pair | ||
| IL_5JUS_269 | No text annotation | ||
| IL_5JUS_099 | No text annotation | ||
| IL_5JUS_100 | Single bulged A | ||
| IL_5JUS_101 | No text annotation | ||
| IL_5JUS_102 | No text annotation | ||
| IL_5JUS_103 | Isolated non-canonical cWW pair | ||
| IL_5JUS_105 | No text annotation | ||
| IL_5JUS_106 | Single bulged A | ||
| IL_5JUS_242 | Isolated non-canonical cWW pair | ||
| IL_5JUS_107 | Single bulged U | ||
| IL_5JUS_108 | No text annotation | ||
| IL_5JUS_109 | Isolated non-canonical cWW pair | ||
| IL_5JUS_110 | tHW-tHW cross-strand stack | ||
| IL_5JUS_111 | Single bulged G | ||
| IL_5JUS_243 | No text annotation | ||
| IL_5JUS_112 | Triple sheared | ||
| IL_5JUS_113 | Major groove platform with extra cWW | ||
| IL_5JUS_114 | Single bulged U | ||
| IL_5JUS_115 | No text annotation | ||
| IL_5JUS_116 | Isolated non-canonical cWW pair | ||
| IL_5JUS_117 | No text annotation | ||
| IL_5JUS_118 | No text annotation | ||
| IL_5JUS_119 | Tandem non-canonical cWW pairs | ||
| IL_5JUS_244 | Single bulged G | ||
| IL_5JUS_120 | No text annotation | ||
| IL_5JUS_245 | No text annotation | ||
| IL_5JUS_121 | Minor groove platform | ||
| IL_5JUS_122 | C-loop | ||
| IL_5JUS_123 | No text annotation | ||
| IL_5JUS_246 | Tandem non-canonical cWW pairs | ||
| IL_5JUS_124 | Isolated non-canonical cWW pair | ||
| IL_5JUS_247 | No text annotation | ||
| IL_5JUS_125 | No text annotation | ||
| IL_5JUS_126 | Isolated non-canonical cWW pair | ||
| IL_5JUS_127 | Single bulged A | ||
| IL_5JUS_128 | Isolated non-canonical cWW pair | ||
| IL_5JUS_129 | UAA/GAN | ||
| IL_5JUS_130 | SSU/LSU pseudoknot | ||
| IL_5JUS_248 | Single bulged U | ||
| IL_5JUS_131 | Isolated non-canonical cWW pair | ||
| IL_5JUS_132 | No text annotation | ||
| IL_5JUS_133 | No text annotation | ||
| IL_5JUS_134 | Single bulged U | ||
| IL_5JUS_135 | No text annotation | ||
| IL_5JUS_136 | No text annotation | ||
| IL_5JUS_137 | Major groove platform with extra cWW | ||
| IL_5JUS_138 | Isolated cWS basepair | ||
| IL_5JUS_249 | No text annotation | ||
| IL_5JUS_139 | Single bulged A | ||
| IL_5JUS_140 | Kink-turn | ||
| IL_5JUS_141 | Single bulged A | ||
| IL_5JUS_250 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_5JUS_270 | 7x6 Sarcin-Ricin; G-bulge | ||
| IL_5JUS_142 | 8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge | ||
| IL_5JUS_143 | No text annotation | ||
| IL_5JUS_144 | UAA/GAN | ||
| IL_5JUS_145 | No text annotation | ||
| IL_5JUS_146 | Multiple bulged bases | ||
| IL_5JUS_251 | Single stack bend | ||
| IL_5JUS_147 | No text annotation | ||
| IL_5JUS_252 | No text annotation | ||
| IL_5JUS_148 | Major groove platform with extra pair | ||
| IL_5JUS_149 | No text annotation | ||
| IL_5JUS_150 | Triple sheared | ||
| IL_5JUS_151 | Isolated non-canonical cWW pair | ||
| IL_5JUS_152 | Single bulged C | ||
| IL_5JUS_153 | Single stack bend | ||
| IL_5JUS_154 | No text annotation | ||
| IL_5JUS_253 | No text annotation | ||
| IL_5JUS_156 | No text annotation | ||
| IL_5JUS_157 | No text annotation | ||
| IL_5JUS_158 | No text annotation | ||
| IL_5JUS_159 | Major groove platform; stack outside cWW | ||
| IL_5JUS_254 | No text annotation | ||
| IL_5JUS_160 | Intercalated tWH | ||
| IL_5JUS_161 | tSH-tSH-tHH-tHS | ||
| IL_5JUS_255 | Isolated non-canonical cWW pair | ||
| IL_5JUS_162 | Tandem non-canonical cWW pairs | ||
| IL_5JUS_163 | No text annotation | ||
| IL_5JUS_164 | No text annotation | ||
| IL_5JUS_165 | Single bulged A | ||
| IL_5JUS_166 | No text annotation | ||
| IL_5JUS_167 | Major groove intercalation | ||
| IL_5JUS_168 | Multiple bulged bases | ||
| IL_5JUS_169 | No text annotation | ||
| IL_5JUS_170 | No text annotation | ||
| IL_5JUS_171 | Bulged stacked bases | ||
| IL_5JUS_173 | No text annotation | ||
| IL_5JUS_174 | No text annotation | ||
| IL_5JUS_176 | Minor groove platform | ||
| IL_5JUS_177 | No text annotation | ||
| IL_5JUS_256 | No text annotation | ||
| IL_5JUS_271 | No text annotation | ||
| IL_5JUS_272 | No text annotation | ||
| IL_5JUS_178 | No text annotation | ||
| IL_5JUS_179 | Single bulged A | ||
| IL_5JUS_180 | Isolated tHS basepair with bulges | ||
| IL_5JUS_181 | Tandem non-canonical cWW pairs | ||
| IL_5JUS_182 | Single stack bend | ||
| IL_5JUS_183 | Major groove platform | ||
| IL_5JUS_257 | No text annotation | ||
| IL_5JUS_184 | Isolated non-canonical cWW pair | ||
| IL_5JUS_185 | Major groove platform | ||
| IL_5JUS_186 | Major groove minor groove platform with extra cWW | ||
| IL_5JUS_187 | No text annotation | ||
| IL_5JUS_188 | Major groove platform | ||
| IL_5JUS_190 | Multiple bulged bases | ||
| IL_5JUS_191 | Isolated non-canonical cWW pair | ||
| IL_5JUS_192 | Major groove platform with intercalation | ||
| IL_5JUS_193 | Isolated non-canonical cWW pair | ||
| IL_5JUS_194 | Single bulged A | ||
| IL_5JUS_258 | Double sheared | ||
| IL_5JUS_195 | Double sheared with non-canonical cWW | ||
| IL_5JUS_196 | Isolated non-canonical cWW pair | ||
| IL_5JUS_198 | Major groove minor groove platform with tHH | ||
| IL_5JUS_199 | UAA/GAN related | ||
| IL_5JUS_201 | UAA/GAN with extra cWW | ||
| IL_5JUS_259 | UAA/GAN | ||
| IL_5JUS_202 | No text annotation | ||
| IL_5JUS_273 | Tandem non-canonical cWW pairs | ||
| IL_5JUS_203 | Isolated non-canonical cWW pair | ||
| IL_5JUS_204 | Single bulged A | ||
| IL_5JUS_206 | Single bulged U | ||
| IL_5JUS_207 | No text annotation | ||
| IL_5JUS_260 | Isolated non-canonical cWW pair | ||
| IL_5JUS_208 | Isolated non-canonical cWW pair | ||
| IL_5JUS_209 | Tandem non-canonical cWW pairs | ||
| IL_5JUS_210 | Tandem non-canonical cWW pairs | ||
| IL_5JUS_261 | Single bulged U | ||
| IL_5JUS_211 | Isolated non-canonical cWW pair | ||
| IL_5JUS_212 | Single bulged U | ||
| IL_5JUS_213 | No text annotation | ||
| IL_5JUS_214 | No text annotation | ||
| IL_5JUS_215 | Single bulged U | ||
| IL_5JUS_216 | Double sheared; A in syn | ||
| IL_5JUS_274 | Isolated non-canonical cWW pair | ||
| IL_5JUS_262 | Tandem non-canonical cWW pairs | ||
| IL_5JUS_217 | Multiple bulged bases | ||
| IL_5JUS_263 | Isolated non-canonical cWW with bulges | ||
| IL_5JUS_218 | Single bulged A | ||
| IL_5JUS_219 | Minor groove platform related | ||
| IL_5JUS_220 | Minor groove platform | ||
| IL_5JUS_221 | Single stack bend | ||
| IL_5JUS_222 | Symmetric double minor groove platform | ||
| IL_5JUS_223 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_5JUS_224 | Isolated non-canonical cWW pair | ||
| IL_5JUS_264 | No text annotation | ||
| IL_5JUS_225 | No text annotation | ||
| IL_5JUS_265 | No text annotation | ||
| IL_5JUS_226 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_5JUS_054 | 1/B/369:376, 1/B/403:410, 1/C/13:20 | No text annotation | ||
| J3_5JUS_055 | 1/B/369:379, 1/B/390:410, 1/C/13:20 | No text annotation | ||
| J3_5JUS_056 | 1/B/435:443, 1/B/491:495, 1/B/618:624 | No text annotation | ||
| J3_5JUS_043 | 1/B/814:820, 1/B/905:907, 1/B/923:926 | No text annotation | homologous J3_8P9A_049 J3_64189.2 | |
| J3_5JUS_018 | 1/B/828:831, 1/B/863:867, 1/B/892:897 | No text annotation | homologous J3_5TBW_005 NA | |
| J3_5JUS_048 | 1/B/2529:2532, 1/B/2547:2563, 1/B/2578:2581 | No text annotation | homologous J3_8C3A_009 NA | |
| J3_5JUS_026 | 1/B/2651:2653, 1/B/2754:2765, 1/B/2793:2798 | No text annotation | homologous J3_8C3A_056 NA | |
| J4_5JUS_003 | 1/B/185:189, 1/B/205:208, 1/B/212:214, 1/B/226:231 | No text annotation | homologous J4_8P9A_013 J4_12410.1 | |
| J4_5JUS_004 | 1/B/1451:1457, 1/B/1475:1478, 1/B/1875:1880, 1/B/2352:2353 | No text annotation | ||
| J4_5JUS_007 | 1/B/2192:2194, 1/B/2248:2249, 1/B/2267:2276, 1/B/2310:2315 | No text annotation | homologous J4_8P9A_018 J4_93343.1 | |
| J4_5JUS_008 | 1/B/2654:2658, 1/B/2712:2716, 1/B/2740:2742, 1/B/2751:2753 | No text annotation | homologous J4_8C3A_008 NA | |
| J5_5JUS_006 | 1/B/658:663, 1/B/799:802, 1/B/941:944, 1/B/1375:1376, 1/B/1431:1437 | No text annotation | homologous J5_8C3A_002 NA | |
| J5_5JUS_010 | 1/B/2399:2406, 1/B/2815:2823, 1/B/2867:2875, 1/B/2952:2957, 1/B/2975:2980 | No text annotation | ||
| J6_5JUS_002 | 1/B/2415:2419, 1/B/2611:2614, 1/B/2627:2628, 1/B/2650:2653, 1/B/2754:2765, 1/B/2793:2805 | No text annotation | ||
| J6_5JUS_003 | 1/B/2416:2419, 1/B/2611:2614, 1/B/2627:2628, 1/B/2650:2653, 1/B/2754:2765, 1/B/2793:2804 | No text annotation | ||
| J9_5JUS_002 | 1/B/18:27, 1/B/58:68, 1/B/75:79, 1/B/106:110, 1/B/321:332, 1/C/31:42, 1/C/102:107, 1/C/115:116, 1/C/137:141 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_5JUS_001 | No text annotation | ||
| J3_5JUS_033 | No text annotation | ||
| J3_5JUS_002 | No text annotation | ||
| J3_5JUS_003 | No text annotation | ||
| J3_5JUS_034 | No text annotation | ||
| J3_5JUS_035 | No text annotation | ||
| J3_5JUS_004 | No text annotation | ||
| J3_5JUS_036 | No text annotation | ||
| J3_5JUS_005 | No text annotation | ||
| J3_5JUS_006 | No text annotation | ||
| J3_5JUS_007 | No text annotation | ||
| J3_5JUS_008 | No text annotation | ||
| J3_5JUS_009 | No text annotation | ||
| J3_5JUS_010 | No text annotation | ||
| J3_5JUS_011 | No text annotation | ||
| J3_5JUS_012 | No text annotation | ||
| J3_5JUS_037 | No text annotation | ||
| J3_5JUS_013 | No text annotation | ||
| J3_5JUS_014 | No text annotation | ||
| J3_5JUS_038 | No text annotation | ||
| J3_5JUS_053 | No text annotation | ||
| J3_5JUS_039 | No text annotation | ||
| J3_5JUS_015 | No text annotation | ||
| J3_5JUS_040 | No text annotation | ||
| J3_5JUS_041 | No text annotation | ||
| J3_5JUS_042 | No text annotation | ||
| J3_5JUS_016 | No text annotation | ||
| J3_5JUS_017 | No text annotation | ||
| J3_5JUS_019 | No text annotation | ||
| J3_5JUS_020 | No text annotation | ||
| J3_5JUS_021 | No text annotation | ||
| J3_5JUS_044 | No text annotation | ||
| J3_5JUS_022 | No text annotation | ||
| J3_5JUS_057 | No text annotation | ||
| J3_5JUS_045 | No text annotation | ||
| J3_5JUS_046 | No text annotation | ||
| J3_5JUS_023 | No text annotation | ||
| J3_5JUS_047 | No text annotation | ||
| J3_5JUS_024 | No text annotation | ||
| J3_5JUS_025 | No text annotation | ||
| J3_5JUS_027 | No text annotation | ||
| J3_5JUS_028 | No text annotation | ||
| J3_5JUS_049 | No text annotation | ||
| J3_5JUS_029 | No text annotation | ||
| J3_5JUS_030 | No text annotation | ||
| J3_5JUS_050 | No text annotation | ||
| J3_5JUS_051 | No text annotation | ||
| J3_5JUS_031 | No text annotation | ||
| J3_5JUS_052 | No text annotation | ||
| J3_5JUS_032 | No text annotation | ||
| J4_5JUS_001 | No text annotation | ||
| J4_5JUS_002 | No text annotation | ||
| J4_5JUS_005 | No text annotation | ||
| J4_5JUS_006 | No text annotation | ||
| J4_5JUS_009 | No text annotation | ||
| J5_5JUS_001 | No text annotation | ||
| J5_5JUS_002 | No text annotation | ||
| J5_5JUS_003 | No text annotation | ||
| J5_5JUS_004 | No text annotation | ||
| J5_5JUS_005 | No text annotation | ||
| J5_5JUS_007 | No text annotation | ||
| J5_5JUS_008 | No text annotation | ||
| J5_5JUS_009 | No text annotation | ||
| J5_5JUS_011 | No text annotation | ||
| J5_5JUS_012 | No text annotation | ||
| J6_5JUS_004 | No text annotation | ||
| J6_5JUS_001 | No text annotation | ||
| J7_5JUS_001 | No text annotation | ||
| J9_5JUS_001 | No text annotation |
Coloring options: