HL_5JUS_013

3D structure

PDB id

5JUS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GGCCCAUUCGGGUC

Length

14 nucleotides

Bulged bases

5JUS|1|A|A|492, 5JUS|1|A|U|494

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JUS|1|A|G|487
5JUS|1|A|G|488
5JUS|1|A|C|489
5JUS|1|A|C|490
5JUS|1|A|C|491
5JUS|1|A|A|492
5JUS|1|A|U|493
5JUS|1|A|U|494
5JUS|1|A|C|495
5JUS|1|A|G|496
5JUS|1|A|G|497
5JUS|1|A|G|498
5JUS|1|A|U|499
5JUS|1|A|C|500

Current chains

Chain A

18S ribosomal RNA

Nearby chains