HL_5JUS_035

3D structure

PDB id

5JUS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GACCUGCAACCUG*C

Length

14 nucleotides

Bulged bases

5JUS|1|A|A|1782, 5JUS|1|A|A|1781, 5JUS|1|A|A|1782

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JUS|1|A|G|1774
5JUS|1|A|A|1782
5JUS|1|A|C|1783
5JUS|1|A|C|1784
5JUS|1|A|U|1785
5JUS|1|A|G|1786
5JUS|1|A|C|1787
5JUS|1|A|A|1781
5JUS|1|A|A|1782
5JUS|1|A|C|1783
5JUS|1|A|C|1784
5JUS|1|A|U|1785
5JUS|1|A|G|1786
*
5JUS|1|A|C|1787

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain B

Large subunit ribosomal RNA; LSU rRNA

Chain LB

uS11 (yeast S14)

Chain SA

eL41 (yeast L41)

Chain XB

eS26 (yeast S26)