HL_5JUS_044
3D structure
- PDB id
- 5JUS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- GGUAAAUUCC
- Length
- 10 nucleotides
- Bulged bases
- 5JUS|1|B|G|304, 5JUS|1|B|U|305
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5JUS_044 not in the Motif Atlas
- Homologous match to HL_8C3A_009
- Geometric discrepancy: 0.3949
- The information below is about HL_8C3A_009
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_15076.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
5JUS|1|B|G|303
5JUS|1|B|G|304
5JUS|1|B|U|305
5JUS|1|B|A|306
5JUS|1|B|A|307
5JUS|1|B|A|308
5JUS|1|B|U|309
5JUS|1|B|U|310
5JUS|1|B|C|311
5JUS|1|B|C|312
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain FA
- uL15 (yeast L28)
- Chain NA
- eL36 (yeast L36)
- Chain Q
- eL13 (yeast L13)
- Chain S
- eL15 (yeast L15)
- Chain TA
- eL42 (yeast L42)
Coloring options: