HL_5JUS_045

3D structure

PDB id

5JUS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

AGUGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JUS_045 not in the Motif Atlas

Homologous match to HL_8C3A_010

Geometric discrepancy: 0.2132

The information below is about HL_8C3A_010

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

5JUS|1|B|A|357
5JUS|1|B|G|358
5JUS|1|B|U|359
5JUS|1|B|G|360
5JUS|1|B|A|361
5JUS|1|B|U|362

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain H

uL4 (yeast L4)

Chain OA

eL37 (yeast L37)

Chain QA

eL39 (yeast L39)