HL_5JUS_070

3D structure

PDB id

5JUS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

AUUUUAU

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JUS_070 not in the Motif Atlas

Geometric match to HL_1WZ2_007

Geometric discrepancy: 0.334

The information below is about HL_1WZ2_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

5JUS|1|B|A|1566
5JUS|1|B|U|1567
5JUS|1|B|U|1568
5JUS|1|B|U|1569
5JUS|1|B|U|1570
5JUS|1|B|A|1571
5JUS|1|B|U|1572

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain C

5.8S ribosomal RNA; 5.8S rRNA