HL_5JUS_071
3D structure
- PDB id
- 5JUS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- GUUAAGAUUC
- Length
- 10 nucleotides
- Bulged bases
- 5JUS|1|B|U|1606
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5JUS_071 not in the Motif Atlas
- Homologous match to HL_8C3A_035
- Geometric discrepancy: 0.3716
- The information below is about HL_8C3A_035
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_35087.1
- Basepair signature
- cWW-tWH-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
5JUS|1|B|G|1599
5JUS|1|B|U|1600
5JUS|1|B|U|1601
5JUS|1|B|A|1602
5JUS|1|B|A|1603
5JUS|1|B|G|1604
5JUS|1|B|A|1605
5JUS|1|B|U|1606
5JUS|1|B|U|1607
5JUS|1|B|C|1608
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain CA
- uL23 (yeast L25)
- Chain LA
- eL34 (yeast L34)
- Chain QA
- eL39 (yeast L39)
- Chain W
- eL19 (yeast L19)
Coloring options: