Loop HL_5JUS

3D structure

PDB id: 5JUS (explore in PDB, NAKB, or RNA 3D Hub)
Description: Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit)
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.2 Å

Loop

Sequence: GGUAGUGAGGGCCUGACGGCCUUGGUAGGCGUCGCUUGCUACAAC
Length: 45 nucleotides
Bulged bases: 5JUS|1|B|U|2056, 5JUS|1|B|G|2058, 5JUS|1|B|C|2075, 5JUS|1|B|A|2086, 5JUS|1|B|A|2093
QA status: Missing nucleotides

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

5JUS|1|B|G|1953
5JUS|1|B|G|1954
5JUS|1|B|U|1955
5JUS|1|B|A|1956
5JUS|1|B|G|1957
5JUS|1|B|U|1958
5JUS|1|B|G|1959
5JUS|1|B|A|1960
5JUS|1|B|G|1961
5JUS|1|B|G|1962
5JUS|1|B|G|1963
5JUS|1|B|C|1964
5JUS|1|B|C|1965
5JUS|1|B|U|1966
5JUS|1|B|G|2048
5JUS|1|B|A|2049
5JUS|1|B|C|2050
5JUS|1|B|G|2051
5JUS|1|B|G|2052
5JUS|1|B|C|2053
5JUS|1|B|C|2054
5JUS|1|B|U|2055
5JUS|1|B|U|2056
5JUS|1|B|G|2057
5JUS|1|B|G|2058
5JUS|1|B|U|2059
5JUS|1|B|A|2060
5JUS|1|B|G|2061
5JUS|1|B|G|2062
5JUS|1|B|C|2075
5JUS|1|B|G|2076
5JUS|1|B|U|2077
5JUS|1|B|C|2078
5JUS|1|B|G|2079
5JUS|1|B|C|2080
5JUS|1|B|U|2081
5JUS|1|B|U|2082
5JUS|1|B|G|2083
5JUS|1|B|C|2084
5JUS|1|B|U|2085
5JUS|1|B|A|2086
5JUS|1|B|C|2087
5JUS|1|B|A|2088
5JUS|1|B|A|2093
5JUS|1|B|C|2094

Current chains

Chain B: 25S ribosomal RNA

Nearby chains

Chain PA: eL38 (yeast L38)
Chain W: eL19 (yeast L19)

HL_5JUS_080