HL_5JUS_087
3D structure
- PDB id
- 5JUS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- GGGAACGGGC
- Length
- 10 nucleotides
- Bulged bases
- 5JUS|1|B|A|2372, 5JUS|1|B|A|2373, 5JUS|1|B|C|2374
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5JUS_087 not in the Motif Atlas
- Homologous match to HL_8C3A_051
- Geometric discrepancy: 0.19
- The information below is about HL_8C3A_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_90642.8
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
5JUS|1|B|G|2369
5JUS|1|B|G|2370
5JUS|1|B|G|2371
5JUS|1|B|A|2372
5JUS|1|B|A|2373
5JUS|1|B|C|2374
5JUS|1|B|G|2375
5JUS|1|B|G|2376
5JUS|1|B|G|2377
5JUS|1|B|C|2378
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain G
- uL3 (yeast L3)
- Chain JA
- eL32 (yeast L32)
- Chain KA
- eL33 (yeast L33)
- Chain T
- uL13 (yeast L16)
Coloring options: