HL_5JUS_088

3D structure

PDB id

5JUS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

AUAAGUGGGAGCUUCGGCGCCAGUGAAAU

Length

29 nucleotides

Bulged bases

5JUS|1|B|U|2460, 5JUS|1|B|A|2462, 5JUS|1|B|G|2465, 5JUS|1|B|U|2472, 5JUS|1|B|C|2473

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JUS|1|B|A|2459
5JUS|1|B|U|2460
5JUS|1|B|A|2461
5JUS|1|B|A|2462
5JUS|1|B|G|2463
5JUS|1|B|U|2464
5JUS|1|B|G|2465
5JUS|1|B|G|2466
5JUS|1|B|G|2467
5JUS|1|B|A|2468
5JUS|1|B|G|2469
5JUS|1|B|C|2470
5JUS|1|B|U|2471
5JUS|1|B|U|2472
5JUS|1|B|C|2473
5JUS|1|B|G|2474
5JUS|1|B|G|2475
5JUS|1|B|C|2476
5JUS|1|B|G|2477
5JUS|1|B|C|2478
5JUS|1|B|C|2479
5JUS|1|B|A|2480
5JUS|1|B|G|2481
5JUS|1|B|U|2482
5JUS|1|B|G|2483
5JUS|1|B|A|2484
5JUS|1|B|A|2485
5JUS|1|B|A|2486
5JUS|1|B|U|2487

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain E

uL1 (yeast L1)

Chain EC

IRES