HL_5JUS_094
3D structure
- PDB id
- 5JUS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- CAAAAGGG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5JUS_094 not in the Motif Atlas
- Homologous match to HL_5TBW_057
- Geometric discrepancy: 0.2255
- The information below is about HL_5TBW_057
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_93324.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 26
Unit IDs
5JUS|1|B|C|2693
5JUS|1|B|A|2694
5JUS|1|B|A|2695
5JUS|1|B|A|2696
5JUS|1|B|A|2697
5JUS|1|B|G|2698
5JUS|1|B|G|2699
5JUS|1|B|G|2700
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain I
- uL18 (yeast L5)
- Chain N
- uL16 (yeast L10)
- Chain Y
- eL21 (yeast L21)
Coloring options: