HL_5JUS_104

3D structure

PDB id

5JUS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

5JUS|1|B|G|3116, 5JUS|1|B|C|3120

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JUS_104 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.1925

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

5JUS|1|B|C|3110
5JUS|1|B|U|3111
5JUS|1|B|G|3112
5JUS|1|B|A|3113
5JUS|1|B|A|3114
5JUS|1|B|C|3115
5JUS|1|B|G|3116
5JUS|1|B|C|3117
5JUS|1|B|C|3118
5JUS|1|B|U|3119
5JUS|1|B|C|3120
5JUS|1|B|U|3121
5JUS|1|B|A|3122
5JUS|1|B|A|3123
5JUS|1|B|G|3124

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain M

uL6 (yeast L9)

Chain RA

eL40 (yeast L40)

Chain T

uL13 (yeast L16)