HL_5JUS_113

3D structure

PDB id

5JUS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CGUCCG

Length

6 nucleotides

Bulged bases

5JUS|1|D|C|39, 5JUS|1|D|C|40

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JUS_113 not in the Motif Atlas

Homologous match to HL_5J7L_203

Geometric discrepancy: 0.4873

The information below is about HL_5J7L_203

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47787.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

10

Unit IDs

5JUS|1|D|C|36
5JUS|1|D|G|37
5JUS|1|D|U|38
5JUS|1|D|C|39
5JUS|1|D|C|40
5JUS|1|D|G|41

Current chains

Chain D

5S ribosomal RNA

Nearby chains

Chain B

Large subunit ribosomal RNA; LSU rRNA

Chain I

uL18 (yeast L5)

Chain O

uL5 (yeast L11)