HL_5JUS_116

3D structure

PDB id

5JUS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

UGCUAUGUAGC*G

Length

12 nucleotides

Bulged bases

5JUS|1|EC|U|6843, 5JUS|1|EC|A|6844, 5JUS|1|EC|G|6845, 5JUS|1|EC|C|6846

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JUS_116 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.218

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.3

Basepair signature

cWW-F

Number of instances in this motif group

5

Unit IDs

5JUS|1|EC|U|6836
5JUS|1|EC|G|6837
5JUS|1|EC|C|6838
5JUS|1|EC|U|6839
5JUS|1|EC|A|6840
5JUS|1|EC|U|6841
5JUS|1|EC|G|6847
5JUS|1|EC|U|6843
5JUS|1|EC|A|6844
5JUS|1|EC|G|6845
5JUS|1|EC|C|6846
*
5JUS|1|EC|G|6847

Current chains

Chain EC

IRES

Nearby chains

Chain CB

uS7 (yeast S5)

Chain LB

uS11 (yeast S14)