HL_5JUS_117

3D structure

PDB id

5JUS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GCAGCCC

Length

7 nucleotides

Bulged bases

5JUS|1|EC|G|6865, 5JUS|1|EC|C|6866

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JUS_117 not in the Motif Atlas

Geometric match to HL_4LFB_005

Geometric discrepancy: 0.2575

The information below is about HL_4LFB_005

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.3

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

5JUS|1|EC|G|6862
5JUS|1|EC|C|6863
5JUS|1|EC|A|6864
5JUS|1|EC|G|6865
5JUS|1|EC|C|6866
5JUS|1|EC|C|6867
5JUS|1|EC|C|6868

Current chains

Chain EC

IRES

Nearby chains

Chain CB

uS7 (yeast S5)

Chain WB

eS25 (yeast S25)