HL_5JUS_122

3D structure

PDB id

5JUS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

UUAGAGAAGGGGGCAACUCCAUCUCAGA

Length

28 nucleotides

Bulged bases

5JUS|1|A|G|1698, 5JUS|1|A|G|1699, 5JUS|1|A|C|1700, 5JUS|1|A|A|1701, 5JUS|1|A|A|1702, 5JUS|1|A|C|1703, 5JUS|1|A|U|1704, 5JUS|1|A|C|1705

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JUS|1|A|U|1687
5JUS|1|A|U|1688
5JUS|1|A|A|1689
5JUS|1|A|G|1690
5JUS|1|A|A|1691
5JUS|1|A|G|1692
5JUS|1|A|A|1693
5JUS|1|A|A|1694
5JUS|1|A|G|1695
5JUS|1|A|G|1696
5JUS|1|A|G|1697
5JUS|1|A|G|1698
5JUS|1|A|G|1699
5JUS|1|A|C|1700
5JUS|1|A|A|1701
5JUS|1|A|A|1702
5JUS|1|A|C|1703
5JUS|1|A|U|1704
5JUS|1|A|C|1705
5JUS|1|A|C|1706
5JUS|1|A|A|1707
5JUS|1|A|U|1708
5JUS|1|A|C|1709
5JUS|1|A|U|1710
5JUS|1|A|C|1711
5JUS|1|A|A|1712
5JUS|1|A|G|1713
5JUS|1|A|A|1714

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain DB

eS6 (yeast S6)