HL_5JUS_123

3D structure

PDB id

5JUS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GCCUCGGU

Length

8 nucleotides

Bulged bases

5JUS|1|B|U|545, 5JUS|1|B|C|546

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JUS_123 not in the Motif Atlas

Homologous match to HL_8P9A_231

Geometric discrepancy: 0.3837

The information below is about HL_8P9A_231

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32682.1

Basepair signature

cWW-F-F

Number of instances in this motif group

3

Unit IDs

5JUS|1|B|G|542
5JUS|1|B|C|543
5JUS|1|B|C|544
5JUS|1|B|U|545
5JUS|1|B|C|546
5JUS|1|B|G|547
5JUS|1|B|G|548
5JUS|1|B|U|549

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain M

uL6 (yeast L9)

Chain X

eL20 (yeast L20)