HL_5JUS_125

3D structure

PDB id

5JUS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

AUCGAAAACUCUCCGAACACUAGGU

Length

25 nucleotides

Bulged bases

5JUS|1|EC|C|6788, 5JUS|1|EC|G|6789, 5JUS|1|EC|A|6790, 5JUS|1|EC|A|6792, 5JUS|1|EC|A|6804, 5JUS|1|EC|U|6806, 5JUS|1|EC|A|6807

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JUS|1|EC|A|6786
5JUS|1|EC|U|6787
5JUS|1|EC|C|6788
5JUS|1|EC|G|6789
5JUS|1|EC|A|6790
5JUS|1|EC|A|6791
5JUS|1|EC|A|6792
5JUS|1|EC|A|6793
5JUS|1|EC|C|6794
5JUS|1|EC|U|6795
5JUS|1|EC|C|6796
5JUS|1|EC|U|6797
5JUS|1|EC|C|6798
5JUS|1|EC|C|6799
5JUS|1|EC|G|6800
5JUS|1|EC|A|6801
5JUS|1|EC|A|6802
5JUS|1|EC|C|6803
5JUS|1|EC|A|6804
5JUS|1|EC|C|6805
5JUS|1|EC|U|6806
5JUS|1|EC|A|6807
5JUS|1|EC|G|6808
5JUS|1|EC|G|6809
5JUS|1|EC|U|6810

Current chains

Chain EC

IRES

Nearby chains

Chain O

uL5 (yeast L11)

Chain TA

eL42 (yeast L42)