HL_5JUS_126

3D structure

PDB id

5JUS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

UUGGGCAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JUS|1|EC|U|6903
5JUS|1|EC|U|6904
5JUS|1|EC|G|6905
5JUS|1|EC|G|6906
5JUS|1|EC|G|6907
5JUS|1|EC|C|6908
5JUS|1|EC|A|6909
5JUS|1|EC|A|6910

Current chains

Chain EC

IRES

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain DC

yeast eEF2

Chain NB

uS9 (yeast S16)