HL_5JUT_005

3D structure

PDB id

5JUT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

5JUT|1|A|U|232, 5JUT|1|A|C|233

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JUT_005 not in the Motif Atlas

Geometric match to HL_4O26_001

Geometric discrepancy: 0.3684

The information below is about HL_4O26_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53014.1

Basepair signature

cWW-F

Number of instances in this motif group

2

Unit IDs

5JUT|1|A|C|230
5JUT|1|A|U|231
5JUT|1|A|U|232
5JUT|1|A|C|233
5JUT|1|A|G|234
5JUT|1|A|G|235

Current chains

Chain A

18S ribosomal RNA

Nearby chains