5JUT Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_5JUT_001 | 1/A/7:17 | No text annotation | homologous HL_4V88_186 NA | |
| HL_5JUT_002 | 1/A/70:81 | No text annotation | homologous HL_4V88_187 NA | |
| HL_5JUT_008 | 1/A/330:338 | GNRA related | homologous HL_4V88_193 NA | |
| HL_5JUT_009 | 1/A/368:373 | No text annotation | homologous HL_4V88_194 NA | |
| HL_5JUT_010 | 1/A/393:404 | No text annotation | homologous HL_4V88_195 NA | |
| HL_5JUT_017 | 1/A/764:772 | No text annotation | homologous HL_8P9A_206 HL_11974.1 | |
| HL_5JUT_020 | 1/A/900:909 | No text annotation | homologous HL_4V88_206 NA | |
| HL_5JUT_022 | 1/A/997:1007 | No text annotation | homologous HL_4V88_208 NA | |
| HL_5JUT_025 | 1/A/1121:1126 | GNRA | homologous HL_4V88_211 NA | |
| HL_5JUT_028 | 1/A/1296:1301 | GNRA | homologous HL_4V88_214 NA | |
| HL_5JUT_037 | 1/B/38:45 | No text annotation | homologous HL_8C3A_001 NA | |
| HL_5JUT_038 | 1/B/69:74 | No text annotation | homologous HL_8C3A_002 NA | |
| HL_5JUT_039 | 1/B/90:96 | No text annotation | homologous HL_8C3A_003 NA | |
| HL_5JUT_041 | 1/B/194:201 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_005 NA | |
| HL_5JUT_042 | 1/B/208:212 | No text annotation | homologous HL_8C3A_006 NA | |
| HL_5JUT_044 | 1/B/278:287 | No text annotation | homologous HL_5TBW_008 NA | |
| HL_5JUT_045 | 1/B/303:312 | Pseudoknot geometry | homologous HL_8C3A_009 NA | |
| HL_5JUT_047 | 1/B/382:387 | GNRA | homologous HL_5TBW_011 NA | |
| HL_5JUT_051 | 1/B/640:649 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_014 NA | |
| HL_5JUT_052 | 1/B/686:694 | No text annotation | homologous HL_8C3A_015 NA | |
| HL_5JUT_053 | 1/B/707:712 | GNRA | homologous HL_8C3A_016 NA | |
| HL_5JUT_057 | 1/B/876:885 | No text annotation | homologous HL_8C3A_020 NA | |
| HL_5JUT_058 | 1/B/910:918 | No text annotation | homologous HL_8C3A_021 NA | |
| HL_5JUT_059 | 1/B/958:963 | Externally structured | homologous HL_8C3A_022 NA | |
| HL_5JUT_062 | 1/B/1126:1132 | GNRA | homologous HL_5TBW_025 NA | |
| HL_5JUT_063 | 1/B/1148:1155 | No text annotation | homologous HL_5TBW_026 NA | |
| HL_5JUT_067 | 1/B/1403:1408 | GNRA | homologous HL_8C3A_030 NA | |
| HL_5JUT_068 | 1/B/1462:1470 | T-loop with 2 stacked bulged bases | homologous HL_5TBW_031 NA | |
| HL_5JUT_069 | 1/B/1506:1512 | Pseudoknot geometry with 3' bulge | homologous HL_8C3A_032 NA | |
| HL_5JUT_070 | 1/B/1544:1549 | GNRA variation | homologous HL_8C3A_033 NA | |
| HL_5JUT_071 | 1/B/1566:1572 | No text annotation | ||
| HL_5JUT_077 | 1/B/1792:1796 | Mini UNCG | homologous HL_5TBW_040 NA | |
| HL_5JUT_078 | 1/B/1844:1851 | No text annotation | homologous HL_8C3A_041 NA | |
| HL_5JUT_079 | 1/B/1862:1868 | GNRA | homologous HL_5TBW_042 NA | |
| HL_5JUT_080 | 1/B/1923:1928 | UNCG | homologous HL_8C3A_043 NA | |
| HL_5JUT_083 | 1/B/2135:2145 | No text annotation | homologous HL_8C3A_046 NA | |
| HL_5JUT_084 | 1/B/2164:2170 | GNRA | homologous HL_8C3A_047 NA | |
| HL_5JUT_085 | 1/B/2220:2225 | GNRA | homologous HL_8C3A_048 NA | |
| HL_5JUT_086 | 1/B/2253:2263 | No text annotation | homologous HL_5TBW_049 NA | |
| HL_5JUT_087 | 1/B/2292:2300 | No text annotation | homologous HL_5TBW_050 NA | |
| HL_5JUT_088 | 1/B/2335:2339 | No text annotation | ||
| HL_5JUT_089 | 1/B/2369:2378 | No text annotation | homologous HL_8C3A_051 NA | |
| HL_5JUT_123 | 1/B/2443:2504 | No text annotation | ||
| HL_5JUT_093 | 1/B/2616:2624 | No text annotation | homologous HL_5TBW_054 NA | |
| HL_5JUT_094 | 1/B/2633:2645 | No text annotation | homologous HL_5TBW_055 NA | |
| HL_5JUT_096 | 1/B/2693:2700 | Pseudoknot geometry | homologous HL_5TBW_057 NA | |
| HL_5JUT_124 | 1/B/2724:2732 | No text annotation | homologous HL_8C3A_059 NA | |
| HL_5JUT_099 | 1/B/2776:2784 | Pseudoknot geometry | homologous HL_8C3A_061 NA | |
| HL_5JUT_101 | 1/B/2897:2904 | No text annotation | homologous HL_5TBW_062 NA | |
| HL_5JUT_102 | 1/B/2920:2926 | No text annotation | homologous HL_5TBW_063 NA | |
| HL_5JUT_103 | 1/B/2963:2968 | GNRA | homologous HL_8C3A_065 NA | |
| HL_5JUT_125 | 1/B/3068:3073 | Ribsomal LSU H95 | homologous HL_8C3A_067 NA | |
| HL_5JUT_106 | 1/B/3110:3124 | No text annotation | homologous HL_8C3A_068 NA | |
| HL_5JUT_108 | 1/B/3240:3247 | No text annotation | homologous HL_8P9A_180 HL_31089.1 | |
| HL_5JUT_111 | 1/C/68:91 | No text annotation | homologous HL_8C3A_075 NA | |
| HL_5JUT_112 | 1/C/108:114 | No text annotation | homologous HL_5TBW_075 NA | |
| HL_5JUT_113 | 1/C/124:129 | No text annotation | homologous HL_5TBW_076 NA | |
| HL_5JUT_115 | 1/D/88:93 | GNRA | homologous HL_7A0S_070 HL_34789.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_5JUT_003 | GNRA related | ||
| HL_5JUT_004 | No text annotation | ||
| HL_5JUT_005 | No text annotation | ||
| HL_5JUT_006 | T-loop with 1 bulged base | ||
| HL_5JUT_007 | No text annotation | ||
| HL_5JUT_011 | UNCG | ||
| HL_5JUT_012 | No text annotation | ||
| HL_5JUT_013 | No text annotation | ||
| HL_5JUT_121 | No text annotation | ||
| HL_5JUT_127 | No text annotation | ||
| HL_5JUT_014 | No text annotation | ||
| HL_5JUT_015 | GNRA variation | ||
| HL_5JUT_016 | No text annotation | ||
| HL_5JUT_018 | No text annotation | ||
| HL_5JUT_019 | Pseudoknot geometry | ||
| HL_5JUT_021 | GNRA | ||
| HL_5JUT_023 | No text annotation | ||
| HL_5JUT_024 | GNRA | ||
| HL_5JUT_026 | No text annotation | ||
| HL_5JUT_027 | Anticodon loop related | ||
| HL_5JUT_029 | No text annotation | ||
| HL_5JUT_030 | No text annotation | ||
| HL_5JUT_031 | GNRA | ||
| HL_5JUT_032 | GNRA | ||
| HL_5JUT_033 | No text annotation | ||
| HL_5JUT_034 | No text annotation | ||
| HL_5JUT_035 | No text annotation | ||
| HL_5JUT_122 | No text annotation | ||
| HL_5JUT_036 | GNRA variation | ||
| HL_5JUT_040 | No text annotation | ||
| HL_5JUT_043 | T-loop with unstacked turn | ||
| HL_5JUT_046 | GNRA | ||
| HL_5JUT_048 | No text annotation | ||
| HL_5JUT_049 | No text annotation | ||
| HL_5JUT_050 | GNRA | ||
| HL_5JUT_054 | GNRA | ||
| HL_5JUT_055 | No text annotation | ||
| HL_5JUT_056 | GNRA | ||
| HL_5JUT_060 | No text annotation | ||
| HL_5JUT_061 | No text annotation | ||
| HL_5JUT_064 | No text annotation | ||
| HL_5JUT_065 | GNRA wlth tandem sheared | ||
| HL_5JUT_066 | Mini UNCG | ||
| HL_5JUT_072 | No text annotation | ||
| HL_5JUT_073 | GNRA | ||
| HL_5JUT_074 | No text annotation | ||
| HL_5JUT_075 | No text annotation | ||
| HL_5JUT_076 | Mini UNCG | ||
| HL_5JUT_081 | No text annotation | ||
| HL_5JUT_082 | No text annotation | ||
| HL_5JUT_090 | No text annotation | ||
| HL_5JUT_091 | No text annotation | ||
| HL_5JUT_092 | No text annotation | ||
| HL_5JUT_095 | No text annotation | ||
| HL_5JUT_097 | tRNA anticodon loop | ||
| HL_5JUT_098 | GNRA | ||
| HL_5JUT_100 | No text annotation | ||
| HL_5JUT_104 | GNRA | ||
| HL_5JUT_105 | No text annotation | ||
| HL_5JUT_107 | No text annotation | ||
| HL_5JUT_109 | No text annotation | ||
| HL_5JUT_110 | Mini UNCG | ||
| HL_5JUT_126 | Pseudoknot with intercalation | ||
| HL_5JUT_114 | No text annotation | ||
| HL_5JUT_116 | No text annotation | ||
| HL_5JUT_117 | No text annotation | ||
| HL_5JUT_118 | No text annotation | ||
| HL_5JUT_119 | No text annotation | ||
| HL_5JUT_120 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_5JUT_003 | 1/A/37:41, 1/A/466:471 | Triple sheared related | homologous IL_4V88_386 NA | |
| IL_5JUT_004 | 1/A/42:48, 1/A/431:433 | No text annotation | homologous IL_4V88_387 NA | |
| IL_5JUT_007 | 1/A/64:69, 1/A/82:86 | No text annotation | homologous IL_4V88_390 NA | |
| IL_5JUT_009 | 1/A/113:116, 1/A/300:301 | Multiple bulged bases | homologous IL_4V88_392 NA | |
| IL_5JUT_227 | 1/A/144:149, 1/A/165:171 | tWH-tWH-tHW-tHW | geometric IL_4LFB_009 IL_00680.1 | |
| IL_5JUT_014 | 1/A/204:206, 1/A/259:263 | Major groove platform with extra cWW | homologous IL_4V88_397 NA | |
| IL_5JUT_019 | 1/A/311:316, 1/A/348:355 | Kink-turn with non-sequential stacking | homologous IL_4V88_402 NA | |
| IL_5JUT_020 | 1/A/318:323, 1/A/345:346 | No text annotation | homologous IL_4V88_403 NA | |
| IL_5JUT_022 | 1/A/389:391, 1/A/406:408 | Isolated cWH basepair | homologous IL_4V88_405 NA | |
| IL_5JUT_023 | 1/A/411:413, 1/A/420:422 | Isolated near basepair | homologous IL_4V88_406 NA | |
| IL_5JUT_030 | 1/A/550:557, 1/A/587:588 | SSU/LSU pseudoknot | geometric IL_4V88_413 NA | |
| IL_5JUT_038 | 1/A/746:747, 1/A/802:805 | Major groove minor groove platform; mini C-loop | homologous IL_4V88_423 NA | |
| IL_5JUT_046 | 1/A/893:899, 1/A/910:919 | Kink-turn related | homologous IL_8C3A_440 NA | |
| IL_5JUT_049 | 1/A/1034:1036, 1/A/1095:1101 | No text annotation | homologous IL_4V88_437 NA | |
| IL_5JUT_050 | 1/A/1041:1044, 1/A/1074:1077 | Tandem non-canonical cWW pairs | homologous IL_4V88_438 NA | |
| IL_5JUT_230 | 1/A/1111:1118, 1/A/1129:1134 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_8P9A_428 IL_84044.1 | |
| IL_5JUT_053 | 1/A/1146:1147, 1/A/1630:1632 | Single bulged A | homologous IL_4V88_441 NA | |
| IL_5JUT_054 | 1/A/1149:1151, 1/A/1627:1628 | Single bulged G | homologous IL_4V88_442 NA | |
| IL_5JUT_254 | 1/A/1345:1348, 1/A/1377:1380 | No text annotation | homologous IL_8P9A_445 IL_78800.2 | |
| IL_5JUT_076 | 1/A/1636:1638, 1/A/1764:1767 | No text annotation | homologous IL_4V88_463 NA | |
| IL_5JUT_077 | 1/A/1638:1641, 1/A/1760:1764 | No text annotation | geometric IL_4V88_464 NA | |
| IL_5JUT_078 | 1/A/1642:1644, 1/A/1757:1759 | Isolated non-canonical cWW pair | homologous IL_4V88_465 NA | |
| IL_5JUT_079 | 1/A/1644:1647, 1/A/1753:1757 | No text annotation | ||
| IL_5JUT_080 | 1/A/1650:1652, 1/A/1748:1750 | Isolated non-canonical cWW pair | homologous IL_4V88_467 NA | |
| IL_5JUT_081 | 1/A/1653:1656, 1/A/1744:1747 | Double sheared | homologous IL_4V88_468 NA | |
| IL_5JUT_083 | 1/A/1665:1667, 1/A/1734:1736 | Isolated non-canonical cWW pair | homologous IL_4V88_470 NA | |
| IL_5JUT_084 | 1/A/1669:1672, 1/A/1729:1732 | Double sheared | geometric IL_1SAQ_002 NA | |
| IL_5JUT_086 | 1/A/1675:1678, 1/A/1723:1726 | Tandem non-canonical cWW pairs | geometric IL_4V88_473 NA | |
| IL_5JUT_255 | 1/B/12:16, 1/C/143:146 | No text annotation | ||
| IL_5JUT_090 | 1/B/27:28, 1/B/56:58 | No text annotation | homologous IL_8C3A_004 NA | |
| IL_5JUT_091 | 1/B/31:38, 1/B/45:53 | No text annotation | homologous IL_8C3A_005 NA | |
| IL_5JUT_092 | 1/B/82:89, 1/B/97:103 | No text annotation | homologous IL_8C3A_006 NA | |
| IL_5JUT_093 | 1/B/123:124, 1/B/144:149 | No text annotation | homologous IL_8C3A_007 NA | |
| IL_5JUT_100 | 1/B/376:379, 1/B/390:403 | No text annotation | homologous IL_5TBW_014 NA | |
| IL_5JUT_258 | 1/B/404:410, 1/C/13:19 | No text annotation | homologous IL_8CRE_016 NA | |
| IL_5JUT_102 | 1/B/429:431, 1/B/628:630 | Isolated non-canonical cWW pair | homologous IL_5TBW_016 NA | |
| IL_5JUT_107 | 1/B/668:670, 1/B/792:794 | Isolated non-canonical cWW pair | homologous IL_8C3A_023 NA | |
| IL_5JUT_108 | 1/B/680:684, 1/B/696:700 | No text annotation | homologous IL_5TBW_022 NA | |
| IL_5JUT_237 | 1/B/725:728, 1/B/741:745 | No text annotation | homologous IL_8C3A_025 NA | |
| IL_5JUT_110 | 1/B/752:753, 1/B/779:781 | Single bulged A | homologous IL_8C3A_026 NA | |
| IL_5JUT_113 | 1/B/803:805, 1/B/938:940 | Isolated non-canonical cWW pair | homologous IL_8C3A_029 NA | |
| IL_5JUT_114 | 1/B/805:809, 1/B/931:938 | tHW-tHW cross-strand stack | geometric IL_5TBW_028 NA | |
| IL_5JUT_115 | 1/B/833:834, 1/B/859:861 | Single bulged G | geometric IL_7A0S_017 IL_28408.1 | |
| IL_5JUT_116 | 1/B/834:838, 1/B/855:859 | Triple sheared | homologous IL_8C3A_033 NA | |
| IL_5JUT_118 | 1/B/873:875, 1/B/886:887 | Single bulged U | homologous IL_8C3A_035 NA | |
| IL_5JUT_119 | 1/B/907:909, 1/B/919:923 | Multiple bulged bases | geometric IL_5TBW_033 NA | |
| IL_5JUT_121 | 1/B/969:970, 1/B/1111:1113 | No text annotation | homologous IL_8C3A_038 NA | |
| IL_5JUT_239 | 1/B/983:985, 1/B/1099:1100 | Single bulged G | geometric IL_8C3A_040 NA | |
| IL_5JUT_240 | 1/B/991:997, 1/B/1052:1058 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | homologous IL_8P9A_266 IL_94128.1 | |
| IL_5JUT_124 | 1/B/997:998, 1/B/1050:1052 | Minor groove platform | homologous IL_8C3A_042 NA | |
| IL_5JUT_125 | 1/B/999:1004, 1/B/1046:1049 | C-loop | homologous IL_5TBW_040 NA | |
| IL_5JUT_126 | 1/B/1006:1009, 1/B/1041:1044 | Tandem non-canonical cWW pairs | homologous IL_5TBW_041 NA | |
| IL_5JUT_127 | 1/B/1009:1011, 1/B/1039:1041 | Isolated non-canonical cWW pair | geometric IL_4M4O_002 NA | |
| IL_5JUT_132 | 1/B/1167:1171, 1/B/1328:1332 | UAA/GAN | homologous IL_8C3A_051 NA | |
| IL_5JUT_133 | 1/B/1173:1180, 1/B/1325:1326 | SSU/LSU pseudoknot | homologous IL_5TBW_049 NA | |
| IL_5JUT_135 | 1/B/1187:1194, 1/B/1314:1319 | No text annotation | homologous IL_5TBW_051 NA | |
| IL_5JUT_136 | 1/B/1194:1205, 1/B/1299:1314 | No text annotation | geometric IL_5TBW_052 NA | |
| IL_5JUT_137 | 1/B/1207:1209, 1/B/1296:1297 | Single bulged U | homologous IL_5TBW_053 NA | |
| IL_5JUT_141 | 1/B/1376:1378, 1/B/1428:1431 | Isolated cWS basepair | homologous IL_5TBW_057 NA | |
| IL_5JUT_142 | 1/B/1385:1387, 1/B/1420:1421 | Single bulged A | homologous IL_5TBW_058 NA | |
| IL_5JUT_143 | 1/B/1388:1395, 1/B/1415:1419 | Kink-turn | homologous IL_8P9A_287 IL_90775.1 | |
| IL_5JUT_144 | 1/B/1398:1400, 1/B/1411:1412 | Single bulged A | homologous IL_5TBW_060 NA | |
| IL_5JUT_242 | 1/B/1501:1505, 1/B/1513:1515 | C-loop | homologous IL_8P9A_290 IL_63596.12 | |
| IL_5JUT_146 | 1/B/1532:1536, 1/B/1585:1590 | UAA/GAN | homologous IL_8C3A_067 NA | |
| IL_5JUT_154 | 1/B/1669:1670, 1/B/1778:1780 | Single bulged C | geometric IL_5TBW_069 NA | |
| IL_5JUT_156 | 1/B/1694:1698, 1/B/1747:1752 | No text annotation | homologous IL_8C3A_077 NA | |
| IL_5JUT_159 | 1/B/1883:1889, 1/B/2346:2349 | No text annotation | homologous IL_5TBW_074 NA | |
| IL_5JUT_244 | 1/B/1895:1897, 1/B/2338:2340 | No text annotation | homologous IL_8C3A_081 NA | |
| IL_5JUT_245 | 1/B/1898:1901, 1/B/2336:2337 | Major groove platform; stack outside cWW | geometric IL_5TBW_076 NA | |
| IL_5JUT_246 | 1/B/1898:1906, 1/B/2333:2337 | No text annotation | geometric IL_8C3A_484 NA | |
| IL_5JUT_247 | 1/B/1901:1906, 1/B/2333:2336 | No text annotation | homologous IL_8C3A_083 NA | |
| IL_5JUT_160 | 1/B/1918:1923, 1/B/1928:1934 | tSH-tSH-tHH-tHS | geometric IL_5TBW_078 NA | |
| IL_5JUT_162 | 1/B/1947:1948, 1/B/2098:2101 | No text annotation | homologous IL_8P9A_309 IL_18824.1 | |
| IL_5JUT_163 | 1/B/2128:2129, 1/B/2323:2325 | Single bulged A | homologous IL_8C3A_087 NA | |
| IL_5JUT_164 | 1/B/2156:2161, 1/B/2173:2180 | No text annotation | homologous IL_8C3A_088 NA | |
| IL_5JUT_165 | 1/B/2196:2199, 1/B/2245:2246 | Major groove intercalation | homologous IL_5TBW_084 NA | |
| IL_5JUT_167 | 1/B/2204:2210, 1/B/2235:2238 | No text annotation | ||
| IL_5JUT_168 | 1/B/2211:2217, 1/B/2228:2234 | No text annotation | homologous IL_8C3A_093 NA | |
| IL_5JUT_169 | 1/B/2276:2277, 1/B/2307:2310 | Bulged stacked bases | geometric IL_4V9F_070 IL_24886.1 | |
| IL_5JUT_170 | 1/B/2277:2288, 1/B/2304:2307 | No text annotation | homologous IL_5TBW_090 NA | |
| IL_5JUT_171 | 1/B/2391:2394, 1/B/2986:2988 | No text annotation | homologous IL_8C3A_096 NA | |
| IL_5JUT_172 | 1/B/2396:2398, 1/B/2981:2984 | No text annotation | homologous IL_8C3A_097 NA | |
| IL_5JUT_174 | 1/B/2412:2413, 1/B/2807:2810 | Minor groove platform | homologous IL_5TBW_094 NA | |
| IL_5JUT_176 | 1/B/2520:2526, 1/B/2584:2587 | No text annotation | homologous IL_5TBW_096 NA | |
| IL_5JUT_177 | 1/B/2614:2615, 1/B/2625:2627 | Single bulged A | homologous IL_5TBW_098 NA | |
| IL_5JUT_179 | 1/B/2718:2721, 1/B/2735:2738 | Tandem non-canonical cWW pairs | homologous IL_8C3A_109 NA | |
| IL_5JUT_180 | 1/B/2770:2773, 1/B/2787:2788 | Single stack bend | homologous IL_8C3A_110 NA | |
| IL_5JUT_181 | 1/B/2823:2824, 1/B/2865:2867 | Major groove platform | homologous IL_5TBW_102 NA | |
| IL_5JUT_248 | 1/B/2823:2826, 1/B/2863:2867 | No text annotation | homologous IL_8C3A_111 NA | |
| IL_5JUT_182 | 1/B/2824:2826, 1/B/2863:2865 | Isolated non-canonical cWW pair | geometric IL_7A0S_026 IL_01003.1 | |
| IL_5JUT_183 | 1/B/2826:2828, 1/B/2862:2863 | Major groove platform | geometric IL_5TBW_104 NA | |
| IL_5JUT_184 | 1/B/2828:2830, 1/B/2858:2862 | Major groove minor groove platform with extra cWW | geometric IL_5TBW_105 NA | |
| IL_5JUT_185 | 1/B/2835:2839, 1/B/2849:2853 | No text annotation | homologous IL_8C3A_114 NA | |
| IL_5JUT_186 | 1/B/2876:2877, 1/B/2949:2951 | Major groove platform | homologous IL_5TBW_107 NA | |
| IL_5JUT_187 | 1/B/2879:2881, 1/B/2943:2947 | Isolated non-canonical cWW with bulges | geometric IL_5TBW_108 NA | |
| IL_5JUT_188 | 1/B/2881:2882, 1/B/2940:2943 | No text annotation | homologous IL_8C3A_117 NA | |
| IL_5JUT_189 | 1/B/2889:2891, 1/B/2912:2914 | Isolated non-canonical cWW pair | homologous IL_8C3A_118 NA | |
| IL_5JUT_190 | 1/B/2891:2892, 1/B/2909:2912 | Major groove platform with intercalation | geometric IL_5TBW_111 NA | |
| IL_5JUT_191 | 1/B/2918:2920, 1/B/2926:2928 | Isolated non-canonical cWW pair | geometric IL_4M4O_001 NA | |
| IL_5JUT_192 | 1/B/2960:2961, 1/B/2970:2972 | Single bulged A | homologous IL_5TBW_113 NA | |
| IL_5JUT_193 | 1/B/3004:3007, 1/B/3139:3144 | Double sheared | homologous IL_5TBW_114 NA | |
| IL_5JUT_195 | 1/B/3018:3025, 1/B/3030:3036 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_5TBW_116 NA | |
| IL_5JUT_196 | 1/B/3047:3051, 1/B/3091:3094 | Major groove minor groove platform with tHH | homologous IL_5TBW_117 NA | |
| IL_5JUT_197 | 1/B/3054:3059, 1/B/3084:3088 | UAA/GAN related | homologous IL_5TBW_118 NA | |
| IL_5JUT_198 | 1/B/3063:3064, 1/B/3077:3080 | Multiple bulged bases | homologous IL_5TBW_119 NA | |
| IL_5JUT_202 | 1/B/3177:3179, 1/B/3210:3211 | Single bulged A | geometric IL_5TBW_123 NA | |
| IL_5JUT_203 | 1/B/3179:3188, 1/B/3204:3210 | No text annotation | homologous IL_5TBW_124 NA | |
| IL_5JUT_204 | 1/B/3193:3194, 1/B/3197:3199 | Single bulged U | homologous IL_5TBW_125 NA | |
| IL_5JUT_208 | 1/B/3300:3303, 1/B/3311:3314 | Tandem non-canonical cWW pairs | homologous IL_5TBW_129 NA | |
| IL_5JUT_210 | 1/B/3324:3325, 1/B/3381:3383 | Single bulged U | homologous IL_8C3A_137 NA | |
| IL_5JUT_211 | 1/B/3328:3330, 1/B/3373:3378 | No text annotation | homologous IL_8C3A_138 NA | |
| IL_5JUT_212 | 1/B/3332:3337, 1/B/3367:3371 | No text annotation | homologous IL_8C3A_139 NA | |
| IL_5JUT_216 | 1/C/43:64, 1/C/96:101 | No text annotation | ||
| IL_5JUT_217 | 1/C/64:66, 1/C/93:96 | Isolated non-canonical cWW with bulges | geometric IL_3KTW_002 NA | |
| IL_5JUT_218 | 1/D/15:16, 1/D/63:65 | Single bulged A | homologous IL_5TBW_372 NA | |
| IL_5JUT_223 | 1/D/72:80, 1/D/100:106 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5TBW_377 NA | |
| IL_5JUT_224 | 1/D/84:87, 1/D/94:96 | Isolated non-canonical cWW pair | homologous IL_5TBW_378 NA | |
| IL_5JUT_250 | 1/EC/6767:6782, 1/EC/6814:6824 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_5JUT_001 | Single bulged C | ||
| IL_5JUT_002 | Isolated non-canonical cWW pair | ||
| IL_5JUT_005 | Minor groove platform | ||
| IL_5JUT_006 | No text annotation | ||
| IL_5JUT_226 | No text annotation | ||
| IL_5JUT_008 | Tandem non-canonical cWW pairs | ||
| IL_5JUT_010 | No text annotation | ||
| IL_5JUT_011 | tWH-tWH-tHW-tHW | ||
| IL_5JUT_012 | Isolated cWH basepair | ||
| IL_5JUT_013 | Double sheared | ||
| IL_5JUT_015 | Isolated non-canonical cWW pair | ||
| IL_5JUT_016 | Single bulged A | ||
| IL_5JUT_017 | No text annotation | ||
| IL_5JUT_018 | Isolated non-canonical cWW pair | ||
| IL_5JUT_021 | No text annotation | ||
| IL_5JUT_024 | Single bulged U | ||
| IL_5JUT_025 | C-loop | ||
| IL_5JUT_026 | Single bulged G | ||
| IL_5JUT_027 | No text annotation | ||
| IL_5JUT_028 | Minor groove platform | ||
| IL_5JUT_029 | Minor groove platform | ||
| IL_5JUT_031 | Single bulged U | ||
| IL_5JUT_032 | Kink-turn related | ||
| IL_5JUT_033 | No text annotation | ||
| IL_5JUT_034 | Isolated non-canonical cWW pair | ||
| IL_5JUT_035 | tSH-tHW-tHS | ||
| IL_5JUT_036 | Isolated non-canonical cWW pair | ||
| IL_5JUT_037 | No text annotation | ||
| IL_5JUT_039 | Isolated non-canonical cWW pair | ||
| IL_5JUT_040 | No text annotation | ||
| IL_5JUT_041 | Major groove platform; stack outside cWW | ||
| IL_5JUT_042 | Decoding loop related | ||
| IL_5JUT_228 | No text annotation | ||
| IL_5JUT_043 | Isolated non-canonical cWW pair | ||
| IL_5JUT_044 | Tandem non-canonical cWW pairs | ||
| IL_5JUT_253 | Isolated non-canonical cWW pair | ||
| IL_5JUT_229 | Tandem non-canonical cWW pairs | ||
| IL_5JUT_045 | No text annotation | ||
| IL_5JUT_047 | Other IL | ||
| IL_5JUT_048 | tSH-tHW-tHS | ||
| IL_5JUT_051 | Single bulged U | ||
| IL_5JUT_052 | 9x7 Sarcin-Ricin with inserted C; G-bulge | ||
| IL_5JUT_055 | C-loop | ||
| IL_5JUT_056 | Isolated non-canonical cWW pair | ||
| IL_5JUT_057 | Minor groove platform | ||
| IL_5JUT_058 | Isolated non-canonical cWW pair | ||
| IL_5JUT_059 | No text annotation | ||
| IL_5JUT_231 | No text annotation | ||
| IL_5JUT_060 | No text annotation | ||
| IL_5JUT_061 | No text annotation | ||
| IL_5JUT_062 | Single bulged U | ||
| IL_5JUT_063 | Isolated cWS basepair | ||
| IL_5JUT_232 | No text annotation | ||
| IL_5JUT_064 | Minor groove platform with extra cWW | ||
| IL_5JUT_065 | Single bulged A | ||
| IL_5JUT_066 | Isolated cWH basepair | ||
| IL_5JUT_067 | Minor groove platform | ||
| IL_5JUT_068 | Isolated non-canonical cWW pair | ||
| IL_5JUT_069 | No text annotation | ||
| IL_5JUT_070 | Isolated non-canonical cWW pair | ||
| IL_5JUT_071 | No text annotation | ||
| IL_5JUT_233 | No text annotation | ||
| IL_5JUT_072 | No text annotation | ||
| IL_5JUT_073 | 180 degree turn | ||
| IL_5JUT_074 | Tandem non-canonical cWW pairs | ||
| IL_5JUT_075 | No text annotation | ||
| IL_5JUT_082 | Single bulged U | ||
| IL_5JUT_085 | Isolated non-canonical cWW pair | ||
| IL_5JUT_087 | Triple sheared | ||
| IL_5JUT_088 | Tandem non-canonical cWW pairs | ||
| IL_5JUT_234 | No text annotation | ||
| IL_5JUT_089 | No text annotation | ||
| IL_5JUT_256 | Isolated non-canonical cWW pair | ||
| IL_5JUT_094 | Isolated non-canonical cWW pair | ||
| IL_5JUT_095 | Single stack bend | ||
| IL_5JUT_096 | No text annotation | ||
| IL_5JUT_235 | No text annotation | ||
| IL_5JUT_257 | Single stack bend | ||
| IL_5JUT_097 | Major groove platform with extra pair | ||
| IL_5JUT_098 | Single bulged U | ||
| IL_5JUT_099 | Single bulged A | ||
| IL_5JUT_101 | No text annotation | ||
| IL_5JUT_103 | No text annotation | ||
| IL_5JUT_236 | No text annotation | ||
| IL_5JUT_259 | No text annotation | ||
| IL_5JUT_104 | Single bulged A | ||
| IL_5JUT_105 | No text annotation | ||
| IL_5JUT_106 | No text annotation | ||
| IL_5JUT_109 | Triple sheared related | ||
| IL_5JUT_111 | Single bulged U | ||
| IL_5JUT_112 | No text annotation | ||
| IL_5JUT_117 | Major groove platform with extra cWW | ||
| IL_5JUT_120 | Isolated non-canonical cWW pair | ||
| IL_5JUT_238 | No text annotation | ||
| IL_5JUT_122 | No text annotation | ||
| IL_5JUT_123 | No text annotation | ||
| IL_5JUT_128 | No text annotation | ||
| IL_5JUT_129 | Isolated non-canonical cWW pair | ||
| IL_5JUT_130 | Single bulged G | ||
| IL_5JUT_131 | Isolated non-canonical cWW pair | ||
| IL_5JUT_134 | Single bulged U | ||
| IL_5JUT_241 | No text annotation | ||
| IL_5JUT_138 | Kink-turn | ||
| IL_5JUT_139 | No text annotation | ||
| IL_5JUT_140 | Major groove platform with extra cWW | ||
| IL_5JUT_145 | No text annotation | ||
| IL_5JUT_147 | Multiple bulged bases | ||
| IL_5JUT_148 | Multiple bulged bases | ||
| IL_5JUT_149 | Single stack bend | ||
| IL_5JUT_150 | No text annotation | ||
| IL_5JUT_151 | No text annotation | ||
| IL_5JUT_152 | Triple sheared | ||
| IL_5JUT_153 | Isolated non-canonical cWW pair | ||
| IL_5JUT_155 | Single stack bend | ||
| IL_5JUT_157 | No text annotation | ||
| IL_5JUT_243 | No text annotation | ||
| IL_5JUT_158 | No text annotation | ||
| IL_5JUT_161 | Isolated non-canonical cWW pair | ||
| IL_5JUT_166 | Multiple bulged bases | ||
| IL_5JUT_173 | Single bulged U | ||
| IL_5JUT_175 | No text annotation | ||
| IL_5JUT_178 | No text annotation | ||
| IL_5JUT_194 | Isolated non-canonical cWW pair | ||
| IL_5JUT_199 | UAA/GAN with extra cWW | ||
| IL_5JUT_249 | UAA/GAN | ||
| IL_5JUT_200 | No text annotation | ||
| IL_5JUT_201 | Isolated non-canonical cWW pair | ||
| IL_5JUT_205 | No text annotation | ||
| IL_5JUT_206 | Isolated non-canonical cWW pair | ||
| IL_5JUT_207 | Tandem non-canonical cWW pairs | ||
| IL_5JUT_209 | Single bulged U | ||
| IL_5JUT_213 | Single bulged U | ||
| IL_5JUT_214 | Double sheared; A in syn | ||
| IL_5JUT_215 | No text annotation | ||
| IL_5JUT_219 | Minor groove platform related | ||
| IL_5JUT_220 | Minor groove platform | ||
| IL_5JUT_221 | Single stack bend | ||
| IL_5JUT_222 | Symmetric double minor groove platform | ||
| IL_5JUT_251 | No text annotation | ||
| IL_5JUT_225 | Single stack bend | ||
| IL_5JUT_252 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_5JUT_004 | 1/A/1037:1039, 1/A/1079:1083, 1/A/1090:1094 | No text annotation | homologous J3_4V88_034 NA | |
| J3_5JUT_008 | 1/A/1215:1220, 1/A/1263:1267, 1/A/1442:1448 | No text annotation | homologous J3_4V88_038 NA | |
| J3_5JUT_010 | 1/A/1293:1294, 1/A/1303:1306, 1/A/1318:1322 | No text annotation | homologous J3_8C3A_085 NA | |
| J3_5JUT_011 | 1/A/1336:1338, 1/A/1386:1389, 1/A/1412:1415 | No text annotation | homologous J3_4V88_040 NA | |
| J3_5JUT_032 | 1/A/1336:1338, 1/A/1386:1391, 1/A/1407:1415 | No text annotation | homologous J3_8C3A_086 NA | |
| J3_5JUT_013 | 1/B/113:123, 1/B/149:158, 1/B/263:267 | No text annotation | homologous J3_8C3A_001 NA | |
| J3_5JUT_033 | 1/B/113:124, 1/B/144:158, 1/B/263:267 | No text annotation | ||
| J3_5JUT_034 | 1/B/185:189, 1/B/205:214, 1/B/226:231 | No text annotation | homologous J3_8P9A_044 J3_97456.1 | |
| J3_5JUT_035 | 1/B/435:443, 1/B/491:495, 1/B/618:624 | No text annotation | ||
| J3_5JUT_014 | 1/B/502:503, 1/B/588:597, 1/B/606:611 | No text annotation | homologous J3_5TBW_003 NA | |
| J3_5JUT_036 | 1/B/814:820, 1/B/905:907, 1/B/923:926 | No text annotation | homologous J3_8P9A_049 J3_46658.1 | |
| J3_5JUT_016 | 1/B/828:831, 1/B/863:867, 1/B/892:897 | No text annotation | homologous J3_5TBW_005 NA | |
| J3_5JUT_019 | 1/B/1479:1485, 1/B/1857:1859, 1/B/1871:1874 | No text annotation | homologous J3_8C3A_006 NA | |
| J3_5JUT_039 | 1/B/1488:1492, 1/B/1836:1843, 1/B/1852:1854 | No text annotation | ||
| J3_5JUT_040 | 1/B/1492:1496, 1/B/1520:1527, 1/B/1833:1836 | No text annotation | ||
| J3_5JUT_020 | 1/B/1526:1531, 1/B/1591:1595, 1/B/1612:1613 | No text annotation | geometric J3_4V9F_016 J3_94309.1 | |
| J3_5JUT_041 | 1/B/1537:1542, 1/B/1551:1566, 1/B/1572:1584 | No text annotation | ||
| J3_5JUT_022 | 1/B/1895:1906, 1/B/2333:2335, 1/B/2339:2340 | No text annotation | ||
| J3_5JUT_023 | 1/B/2432:2435, 1/B/2512:2517, 1/B/2590:2597 | No text annotation | homologous J3_8C3A_008 NA | |
| J3_5JUT_043 | 1/B/2529:2532, 1/B/2547:2563, 1/B/2578:2581 | No text annotation | homologous J3_8C3A_009 NA | |
| J3_5JUT_044 | 1/B/2651:2653, 1/B/2754:2765, 1/B/2793:2798 | No text annotation | homologous J3_8C3A_056 NA | |
| J3_5JUT_024 | 1/B/2664:2666, 1/B/2690:2692, 1/B/2701:2706 | No text annotation | homologous J3_5TBW_013 NA | |
| J3_5JUT_025 | 1/B/2886:2889, 1/B/2914:2916, 1/B/2930:2936 | No text annotation | homologous J3_8C3A_011 NA | |
| J3_5JUT_045 | 1/B/3171:3176, 1/B/3212:3220, 1/B/3265:3279 | No text annotation | homologous J3_8P9A_064 J3_03190.1 | |
| J3_5JUT_026 | 1/B/3298:3300, 1/B/3314:3318, 1/B/3388:3390 | No text annotation | homologous J3_5TBW_015 NA | |
| J3_5JUT_027 | 1/D/9:14, 1/D/66:67, 1/D/111:112 | No text annotation | homologous J3_5TBW_045 NA | |
| J4_5JUT_001 | 1/A/99:107, 1/A/307:309, 1/A/357:361, 1/A/383:384 | No text annotation | homologous J4_8C3A_021 NA | |
| J4_5JUT_002 | 1/A/622:624, 1/A/975:980, 1/A/1021:1032, 1/A/1103:1104 | No text annotation | homologous J4_8C3A_022 NA | |
| J4_5JUT_003 | 1/B/112:113, 1/B/267:272, 1/B/293:299, 1/B/316:319 | No text annotation | homologous J4_8P9A_012 J4_94698.1 | |
| J4_5JUT_004 | 1/B/185:189, 1/B/205:208, 1/B/212:214, 1/B/226:231 | No text annotation | homologous J4_8P9A_013 J4_43318.1 | |
| J4_5JUT_005 | 1/B/340:356, 1/B/363:376, 1/B/403:404, 1/C/19:24 | No text annotation | ||
| J4_5JUT_006 | 1/B/340:356, 1/B/363:379, 1/B/390:404, 1/C/19:24 | No text annotation | ||
| J4_5JUT_007 | 1/B/1444:1457, 1/B/1475:1476, 1/B/1877:1880, 1/B/2352:2359 | No text annotation | ||
| J4_5JUT_008 | 1/B/1528:1531, 1/B/1591:1595, 1/B/1612:1615, 1/B/1829:1832 | No text annotation | ||
| J4_5JUT_010 | 1/B/2130:2134, 1/B/2146:2150, 1/B/2186:2190, 1/B/2317:2322 | No text annotation | homologous J4_8C3A_006 NA | |
| J4_5JUT_011 | 1/B/2192:2194, 1/B/2248:2249, 1/B/2267:2276, 1/B/2310:2315 | No text annotation | homologous J4_8C3A_007 NA | |
| J4_5JUT_012 | 1/B/2654:2658, 1/B/2712:2716, 1/B/2740:2742, 1/B/2751:2753 | No text annotation | homologous J4_8C3A_008 NA | |
| J4_5JUT_013 | 1/B/3010:3012, 1/B/3042:3043, 1/B/3098:3100, 1/B/3134:3136 | No text annotation | homologous J4_8P9A_020 J4_37757.1 | |
| J5_5JUT_002 | 1/A/54:57, 1/A/90:97, 1/A/386:388, 1/A/409:411, 1/A/422:426 | No text annotation | homologous J5_8C3A_020 NA | |
| J5_5JUT_005 | 1/A/636:641, 1/A/693:698, 1/A/740:744, 1/A/807:824, 1/A/848:860 | No text annotation | ||
| J5_5JUT_006 | 1/B/658:663, 1/B/799:802, 1/B/941:944, 1/B/1375:1376, 1/B/1431:1437 | No text annotation | homologous J5_8P9A_011 J5_08384.1 | |
| J5_5JUT_007 | 1/B/675:678, 1/B/702:706, 1/B/713:721, 1/B/749:751, 1/B/782:787 | No text annotation | homologous J5_8P9A_012 J5_56629.1 | |
| J5_5JUT_008 | 1/B/1906:1914, 1/B/1938:1939, 1/B/2109:2110, 1/B/2114:2122, 1/B/2331:2333 | No text annotation | homologous J5_8C3A_004 NA | |
| J5_5JUT_009 | 1/B/2399:2406, 1/B/2815:2823, 1/B/2867:2875, 1/B/2952:2957, 1/B/2975:2980 | No text annotation | ||
| J5_5JUT_010 | 1/B/2416:2419, 1/B/2611:2614, 1/B/2627:2628, 1/B/2650:2651, 1/B/2798:2804 | No text annotation | homologous J5_8C3A_006 NA | |
| J6_5JUT_001 | 1/B/2416:2419, 1/B/2611:2614, 1/B/2627:2628, 1/B/2650:2653, 1/B/2754:2765, 1/B/2793:2804 | No text annotation | ||
| J7_5JUT_001 | 1/B/949:954, 1/B/967:968, 1/B/1114:1117, 1/B/1141:1146, 1/B/1157:1161, 1/B/1338:1339, 1/B/1365:1370 | No text annotation | ||
| J9_5JUT_002 | 1/B/20:27, 1/B/58:68, 1/B/75:79, 1/B/106:110, 1/B/321:331, 1/C/32:42, 1/C/102:107, 1/C/115:116, 1/C/137:139 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_5JUT_001 | No text annotation | ||
| J3_5JUT_029 | No text annotation | ||
| J3_5JUT_048 | No text annotation | ||
| J3_5JUT_002 | No text annotation | ||
| J3_5JUT_030 | No text annotation | ||
| J3_5JUT_031 | No text annotation | ||
| J3_5JUT_003 | No text annotation | ||
| J3_5JUT_005 | No text annotation | ||
| J3_5JUT_006 | No text annotation | ||
| J3_5JUT_007 | No text annotation | ||
| J3_5JUT_009 | No text annotation | ||
| J3_5JUT_012 | No text annotation | ||
| J3_5JUT_015 | No text annotation | ||
| J3_5JUT_017 | No text annotation | ||
| J3_5JUT_037 | No text annotation | ||
| J3_5JUT_018 | No text annotation | ||
| J3_5JUT_038 | No text annotation | ||
| J3_5JUT_021 | No text annotation | ||
| J3_5JUT_042 | No text annotation | ||
| J3_5JUT_046 | No text annotation | ||
| J3_5JUT_047 | No text annotation | ||
| J3_5JUT_028 | No text annotation | ||
| J4_5JUT_009 | No text annotation | ||
| J5_5JUT_001 | No text annotation | ||
| J5_5JUT_003 | No text annotation | ||
| J5_5JUT_004 | No text annotation | ||
| J9_5JUT_001 | No text annotation |
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