HL_5JUT_011
3D structure
- PDB id
- 5JUT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- CCAAGG
- Length
- 6 nucleotides
- Bulged bases
- 5JUT|1|A|A|416
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5JUT_011 not in the Motif Atlas
- Homologous match to HL_4V88_196
- Geometric discrepancy: 0.3371
- The information below is about HL_4V88_196
- Detailed Annotation
- UNCG
- Broad Annotation
- No text annotation
- Motif group
- HL_34617.1
- Basepair signature
- cWW-tSW-F
- Number of instances in this motif group
- 57
Unit IDs
5JUT|1|A|C|414
5JUT|1|A|C|415
5JUT|1|A|A|416
5JUT|1|A|A|417
5JUT|1|A|G|418
5JUT|1|A|G|419
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain AA
- uL14 (yeast L23)
- Chain BA
- eL24 (yeast L24)
- Chain DB
- eS6 (yeast S6)
- Chain VB
- eS24 (yeast S24)
Coloring options: