HL_5JUT_013

3D structure

PDB id

5JUT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

AGGGCCCAUUCGGGUCUU

Length

18 nucleotides

Bulged bases

5JUT|1|A|A|492, 5JUT|1|A|C|495

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JUT|1|A|A|485
5JUT|1|A|G|486
5JUT|1|A|G|487
5JUT|1|A|G|488
5JUT|1|A|C|489
5JUT|1|A|C|490
5JUT|1|A|C|491
5JUT|1|A|A|492
5JUT|1|A|U|493
5JUT|1|A|U|494
5JUT|1|A|C|495
5JUT|1|A|G|496
5JUT|1|A|G|497
5JUT|1|A|G|498
5JUT|1|A|U|499
5JUT|1|A|C|500
5JUT|1|A|U|501
5JUT|1|A|U|502

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain BC

eS30 (yeast S30)

Chain GB

uS4 (yeast S9)