HL_5JUT_031

3D structure

PDB id

5JUT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UUUCAAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JUT_031 not in the Motif Atlas

Homologous match to HL_4V88_217

Geometric discrepancy: 0.5684

The information below is about HL_4V88_217

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_67216.9

Basepair signature

cWW-cWW-F-tSH

Number of instances in this motif group

9

Unit IDs

5JUT|1|A|U|1396
5JUT|1|A|U|1397
5JUT|1|A|U|1398
5JUT|1|A|C|1399
5JUT|1|A|A|1400
5JUT|1|A|A|1401
5JUT|1|A|G|1402

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain OB

eS17 (yeast S17)

Chain ZB

eS28 (yeast S28)