HL_5JUT_034
3D structure
- PDB id
- 5JUT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- GUCAUCAGC
- Length
- 9 nucleotides
- Bulged bases
- 5JUT|1|A|G|1601
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5JUT_034 not in the Motif Atlas
- Homologous match to HL_4V88_220
- Geometric discrepancy: 0.266
- The information below is about HL_4V88_220
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_01927.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
5JUT|1|A|G|1594
5JUT|1|A|U|1595
5JUT|1|A|C|1596
5JUT|1|A|A|1597
5JUT|1|A|U|1598
5JUT|1|A|C|1599
5JUT|1|A|A|1600
5JUT|1|A|G|1601
5JUT|1|A|C|1602
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain AC
- uS14 (yeast S29)
- Chain NB
- uS9 (yeast S16)
- Chain QB
- eS19 (yeast S19)
- Chain RB
- uS10 (yeast S20)
Coloring options: