HL_5JUT_041

3D structure

PDB id

5JUT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UUGGAACA

Length

8 nucleotides

Bulged bases

5JUT|1|B|C|200

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JUT_041 not in the Motif Atlas

Homologous match to HL_8C3A_005

Geometric discrepancy: 0.2458

The information below is about HL_8C3A_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

5JUT|1|B|U|194
5JUT|1|B|U|195
5JUT|1|B|G|196
5JUT|1|B|G|197
5JUT|1|B|A|198
5JUT|1|B|A|199
5JUT|1|B|C|200
5JUT|1|B|A|201

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain DA

uL24 (yeast L26)

Chain H

uL4 (yeast L4)

Chain JA

eL32 (yeast L32)