HL_5JUT_048

3D structure

PDB id

5JUT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GCUCGC

Length

6 nucleotides

Bulged bases

5JUT|1|B|U|481

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JUT_048 not in the Motif Atlas

Geometric match to HL_8KAL_003

Geometric discrepancy: 0.2549

The information below is about HL_8KAL_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

5JUT|1|B|G|452
5JUT|1|B|C|453
5JUT|1|B|U|481
5JUT|1|B|C|482
5JUT|1|B|G|483
5JUT|1|B|C|484

Current chains

Chain B

25S ribosomal RNA

Nearby chains