HL_5JUT_081
3D structure
- PDB id
- 5JUT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- GGCCUCUUGUAGAC*C
- Length
- 15 nucleotides
- Bulged bases
- 5JUT|1|B|G|2062, 5JUT|1|B|C|2064, 5JUT|1|B|U|2065, 5JUT|1|B|C|2066, 5JUT|1|B|U|2067, 5JUT|1|B|U|2068, 5JUT|1|B|G|2069, 5JUT|1|B|U|2070, 5JUT|1|B|A|2071, 5JUT|1|B|G|2072, 5JUT|1|B|A|2073, 5JUT|1|B|C|2074
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5JUT|1|B|G|2061
5JUT|1|B|G|2062
5JUT|1|B|C|2075
5JUT|1|B|C|2064
5JUT|1|B|U|2065
5JUT|1|B|C|2066
5JUT|1|B|U|2067
5JUT|1|B|U|2068
5JUT|1|B|G|2069
5JUT|1|B|U|2070
5JUT|1|B|A|2071
5JUT|1|B|G|2072
5JUT|1|B|A|2073
5JUT|1|B|C|2074
*
5JUT|1|B|C|2075
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain FB
- eS8 (yeast S8)
Coloring options: