HL_5JUT_093

3D structure

PDB id

5JUT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

5JUT|1|B|G|2618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JUT_093 not in the Motif Atlas

Homologous match to HL_5TBW_054

Geometric discrepancy: 0.226

The information below is about HL_5TBW_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

5JUT|1|B|C|2616
5JUT|1|B|U|2617
5JUT|1|B|G|2618
5JUT|1|B|G|2619
5JUT|1|B|G|2620
5JUT|1|B|G|2621
5JUT|1|B|C|2622
5JUT|1|B|G|2623
5JUT|1|B|G|2624

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain GA

eL29 (yeast L29)

Chain N

uL16 (yeast L10)