HL_5JUT_095

3D structure

PDB id

5JUT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

AACAGAAAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JUT_095 not in the Motif Atlas

Homologous match to HL_8C3A_057

Geometric discrepancy: 0.2499

The information below is about HL_8C3A_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_72777.1

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

5JUT|1|B|A|2673
5JUT|1|B|A|2674
5JUT|1|B|C|2675
5JUT|1|B|A|2676
5JUT|1|B|G|2677
5JUT|1|B|A|2678
5JUT|1|B|A|2679
5JUT|1|B|A|2680
5JUT|1|B|U|2681

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain EC

IRES

Chain O

uL5 (yeast L11)