HL_5JUT_097
3D structure
- PDB id
- 5JUT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- UUUCAGUGUGA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5JUT_097 not in the Motif Atlas
- Geometric match to HL_1J1U_002
- Geometric discrepancy: 0.3946
- The information below is about HL_1J1U_002
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_11974.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 17
Unit IDs
5JUT|1|B|U|2723
5JUT|1|B|U|2724
5JUT|1|B|U|2725
5JUT|1|B|C|2726
5JUT|1|B|A|2727
5JUT|1|B|G|2728
5JUT|1|B|U|2729
5JUT|1|B|G|2730
5JUT|1|B|U|2731
5JUT|1|B|G|2732
5JUT|1|B|A|2733
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain FA
- uL15 (yeast L28)
- Chain TA
- eL42 (yeast L42)
- Chain V
- eL18 (yeast L18)
- Chain Y
- eL21 (yeast L21)
Coloring options: