HL_5JUT_108

3D structure

PDB id

5JUT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CGGAAAGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JUT_108 not in the Motif Atlas

Homologous match to HL_8P9A_180

Geometric discrepancy: 0.2112

The information below is about HL_8P9A_180

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_07886.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

6

Unit IDs

5JUT|1|B|C|3240
5JUT|1|B|G|3241
5JUT|1|B|G|3242
5JUT|1|B|A|3243
5JUT|1|B|A|3244
5JUT|1|B|A|3245
5JUT|1|B|G|3246
5JUT|1|B|G|3247

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain G

uL3 (yeast L3)

Chain T

uL13 (yeast L16)