HL_5JUT_113

3D structure

PDB id

5JUT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GUAUUC

Length

6 nucleotides

Bulged bases

5JUT|1|C|U|125, 5JUT|1|C|U|127, 5JUT|1|C|U|128

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JUT_113 not in the Motif Atlas

Homologous match to HL_5TBW_076

Geometric discrepancy: 0.331

The information below is about HL_5TBW_076

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_45177.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

5JUT|1|C|G|124
5JUT|1|C|U|125
5JUT|1|C|A|126
5JUT|1|C|U|127
5JUT|1|C|U|128
5JUT|1|C|C|129

Current chains

Chain C

5.8S ribosomal RNA

Nearby chains

Chain B

Large subunit ribosomal RNA; LSU rRNA

Chain CA

uL23 (yeast L25)