HL_5JUT_116

3D structure

PDB id

5JUT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CAUCGAAAACUCUCCGAACACGGUGU*G

Length

27 nucleotides

Bulged bases

5JUT|1|EC|A|6792, 5JUT|1|EC|A|6793, 5JUT|1|EC|A|6804, 5JUT|1|EC|C|6805

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JUT|1|EC|C|6785
5JUT|1|EC|A|6786
5JUT|1|EC|U|6787
5JUT|1|EC|C|6788
5JUT|1|EC|G|6789
5JUT|1|EC|A|6790
5JUT|1|EC|A|6791
5JUT|1|EC|A|6792
5JUT|1|EC|A|6793
5JUT|1|EC|C|6794
5JUT|1|EC|U|6795
5JUT|1|EC|C|6796
5JUT|1|EC|U|6797
5JUT|1|EC|C|6798
5JUT|1|EC|C|6799
5JUT|1|EC|G|6800
5JUT|1|EC|A|6801
5JUT|1|EC|A|6802
5JUT|1|EC|C|6803
5JUT|1|EC|A|6804
5JUT|1|EC|C|6805
5JUT|1|EC|G|6808
5JUT|1|EC|G|6809
5JUT|1|EC|U|6810
5JUT|1|EC|G|6811
5JUT|1|EC|U|6810
*
5JUT|1|EC|G|6811

Current chains

Chain EC

IRES

Nearby chains

Chain O

uL5 (yeast L11)

Chain TA

eL42 (yeast L42)