HL_5JUT_117

3D structure

PDB id

5JUT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UUUGCUGUACGUGUA

Length

15 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JUT|1|EC|U|6834
5JUT|1|EC|U|6835
5JUT|1|EC|U|6836
5JUT|1|EC|G|6837
5JUT|1|EC|C|6838
5JUT|1|EC|U|6839
5JUT|1|EC|G|6847
5JUT|1|EC|U|6848
5JUT|1|EC|A|6849
5JUT|1|EC|C|6850
5JUT|1|EC|G|6851
5JUT|1|EC|U|6852
5JUT|1|EC|G|6853
5JUT|1|EC|U|6854
5JUT|1|EC|A|6855

Current chains

Chain EC

IRES

Nearby chains

Chain CB

uS7 (yeast S5)